| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,334,466 – 4,334,543 |
| Length | 77 |
| Max. P | 0.635340 |
| Location | 4,334,466 – 4,334,543 |
|---|---|
| Length | 77 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 62.19 |
| Shannon entropy | 0.60934 |
| G+C content | 0.50325 |
| Mean single sequence MFE | -17.56 |
| Consensus MFE | -4.38 |
| Energy contribution | -5.06 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.635340 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4334466 77 + 23011544 -----------UUUUCGGGCUUCCUGCAGUCUGCAGUCGCAGUCGCAGAUUUAUUUAGCUA-CCAGCUACCCACCACCACCACCAUAAU--- -----------.....(((....((((.(.((((....)))).))))).......((((..-...))))))).................--- ( -19.80, z-score = -3.51, R) >droSim1.chr2L 4256437 67 + 22036055 -----------UUUUCGGGCUUCCUGCACUCUGCAGUCGCAG------AUUUAUUUAGCUA-----CCCACCACCACCACCACCAUAAU--- -----------.....(((....((((.....))))..((.(------(.....)).))..-----)))....................--- ( -10.20, z-score = -1.43, R) >droSec1.super_5 2431989 74 + 5866729 -----------UUUUCGGGCUUCCUGCAGUCUGCAGUCGCAG------AUUUAUUUAGCUA-CCAGCUACCCACCACCACCACCACCAUAAU -----------.....(((........(((((((....))))------)))....((((..-...))))))).................... ( -15.80, z-score = -2.82, R) >droEre2.scaffold_4929 4411337 70 + 26641161 -----------UUUUCGGGCUUGCUGCAAUCUGCAGUCGCAG------AUUUAUUUGGCCAGCCAACCAACCACC--CUCCACCAAAAU--- -----------......((((.((((.(((((((....))))------)))....)))).))))...........--............--- ( -17.80, z-score = -1.86, R) >droAna3.scaffold_12916 1528319 87 + 16180835 UUCACCUUGAGGUGCAGUGGCUCCUGUAAUCCAUUGCC-CAGCUGGAGUCCUAAGGAAAUA-CCAUAGAAACCCAGCCCUCCCCUUACU--- ........((((.(((((((..........))))))).-..(((((.((.(((.((.....-)).)))..)))))))))))........--- ( -24.20, z-score = -1.80, R) >consensus ___________UUUUCGGGCUUCCUGCAAUCUGCAGUCGCAG______AUUUAUUUAGCUA_CCAGCCAACCACCACCACCACCAUAAU___ ................((((...((((.....))))..))...............((((......)))).)).................... ( -4.38 = -5.06 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:13 2011