| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,225,945 – 5,226,047 |
| Length | 102 |
| Max. P | 0.973702 |
| Location | 5,225,945 – 5,226,047 |
|---|---|
| Length | 102 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 81.35 |
| Shannon entropy | 0.38791 |
| G+C content | 0.38037 |
| Mean single sequence MFE | -21.21 |
| Consensus MFE | -14.35 |
| Energy contribution | -14.30 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.973702 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5225945 102 - 24543557 ---GUCUGGUUCAGUGCUCAAUAAUGAUUUCCAUUGCGAAUUAUUUGCAUUUCCCCAAACUCAUUA-UGUUUGCAUUGUGCAAAAAUUCGUUUCGACUUUUGCCAU------- ---...((((..(((.......((((.....))))(((((((.(((((((.....(((((......-.)))))....))))))))))))))....)))...)))).------- ( -23.00, z-score = -2.54, R) >droAna3.scaffold_13337 9983295 95 + 23293914 ---GUCUGGUUCACUGCUCAAUAAUGAUUUCCAUUGCGAGUUAUUUGCAUUUCCCCAAACUCAUUA-UGUUUGCAUUGUGCAGAAUUUCGACUUGCCAC-------------- ---(((.(((((...((((..(((((.....))))).))))....(((((.....(((((......-.)))))....))))))))))..))).......-------------- ( -19.30, z-score = -1.11, R) >droEre2.scaffold_4784 7920907 102 - 25762168 ---GUCUGGUUCAAUGCUCAAUAAUGAUUUCCAUUGCGAAUUAUUUGCAUUUCCCCAAACUCAUUA-UGUUUGCAUUGUGCAAAAAUUCGCUUCGACUUUUGCUAU------- ---((((((.(((.((.....)).)))...)))..(((((((.(((((((.....(((((......-.)))))....))))))))))))))...))).........------- ( -24.10, z-score = -3.14, R) >droYak2.chr3L 5789200 102 - 24197627 ---GUCUGGUUCAGUGCUCAAUAAUGAUUUCCAUUGCGAGUUAUUUGCAUUUCCCCAAACUCAUUA-UGUUUGCAUUGUGCAAAAAUUCGUUCGGACUUUUGCCAU------- ---...((((..(((.(.....((((.....))))(((((((.(((((((.....(((((......-.)))))....))))))))))))))..).)))...)))).------- ( -24.90, z-score = -2.39, R) >droSec1.super_2 5179298 102 - 7591821 ---GUCUGGUUCAGUGCUCAAUAAUGAUUUCCAUUGCGAAUUAUUAGCAUUUCCCCAAACUCAUUA-UGUUUGCAUUGUGCAAAAAUUCGUUUCGACUUUUGCCAU------- ---...((((..(((.......((((.....))))(((((((.((.((((.....(((((......-.)))))....)))))).)))))))....)))...)))).------- ( -19.50, z-score = -1.35, R) >droSim1.chr3L 4744690 102 - 22553184 ---GUCUGGUUCAGUGCUCAAUAAUGAUUUCCAUUGCGAAUUAUUUGCAUUUCCCCAAACUCAUUA-UGUUUGCAUUGUGCAGAAAUUCGUUUCGACUUCUGCCAU------- ---...((((..(((.......((((.....))))(((((((.(((((((.....(((((......-.)))))....))))))))))))))....)))...)))).------- ( -23.10, z-score = -2.16, R) >droPer1.super_405 9267 91 - 24988 UUUCUCCGGUUCAGUGCUCAAUAAUGAUUUCCAUUGCGAAUUAUUUGCAUUUCCCCAAACUCAUUAUUGUAUGCAUUGUCCACCCCGCCAC---------------------- .......((..((((((.((((((((((((....(((((.....))))).......))).)))))))))...)))))).))..........---------------------- ( -21.50, z-score = -4.43, R) >dp4.chrXR_group6 7482615 91 - 13314419 UUUCUCCGGUUCAGUGCUCAAUAAUGAUUUCCAUUGCGAAUUAUUUGCAUUUCCCCAAACUCAUUAUUGUAUGCAUUGUCCACCCCGCCAC---------------------- .......((..((((((.((((((((((((....(((((.....))))).......))).)))))))))...)))))).))..........---------------------- ( -21.50, z-score = -4.43, R) >droWil1.scaffold_180698 6936475 101 + 11422946 ---GUCUGGUUCAGUGCUCAAUAAUGAUUUCCAUUGCGAAUUAUUUGCAUUUCCCCAAACUCAUUA-UGUUUGCAUUGUGGA-AUUUUCUUCUUUUUUUUUGGCAU------- ---(((.....((((((...((((((((((....(((((.....))))).......))).))))))-)....)))))).(((-(.....))))........)))..------- ( -17.00, z-score = -0.30, R) >droVir3.scaffold_13049 7965108 99 - 25233164 ---GUCUGGUUCAGUGCUCAAUAAUGAUUUCCAUUGCGAAUUAUUUGCAUUUCCCCGAACUCAUUA-UGUUUGCAU--UGUAAAAUUU-GCUUCGACUCUGGCUAC------- ---(((.(((.((((((...(((((((.(((...(((((.....))))).......))).))))))-)....))))--))........-)))..))).........------- ( -20.10, z-score = -1.46, R) >droMoj3.scaffold_6680 11627145 109 - 24764193 ---GUUCGGUUCAGUGCUCAAUAAUGAUUUCCAUUGCGAAUUAUUUGCAUUUCCCCGAACUCAUUA-UGUUUGCAUUGUGUAAAAUUCAGCUACGACUCUCGAUUCUCGCUUU ---..((((..((((((...(((((((.(((...(((((.....))))).......))).))))))-)....))))))((((.........))))....)))).......... ( -19.30, z-score = -0.57, R) >consensus ___GUCUGGUUCAGUGCUCAAUAAUGAUUUCCAUUGCGAAUUAUUUGCAUUUCCCCAAACUCAUUA_UGUUUGCAUUGUGCAAAAAUUCGCUUCGACUUUUGCCAU_______ ........(..((((((.((.(((((((((....((((((...)))))).......))).)))))).))...))))))..)................................ (-14.35 = -14.30 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:35 2011