| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,191,872 – 5,191,936 |
| Length | 64 |
| Max. P | 0.535801 |
| Location | 5,191,872 – 5,191,936 |
|---|---|
| Length | 64 |
| Sequences | 4 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 83.45 |
| Shannon entropy | 0.26169 |
| G+C content | 0.58918 |
| Mean single sequence MFE | -24.15 |
| Consensus MFE | -21.80 |
| Energy contribution | -21.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.535801 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5191872 64 - 24543557 ------AAGUGUGUGUCCCGGGGAUACUGGCUGCUGGGUAAGA---GGGGGAGGUGCUGAAGUUCCUGCCCCA ------.(((..((((((...))))))..)))...........---((((.(((.((....)).))).)))). ( -23.90, z-score = -0.62, R) >droYak2.chr3L 5753595 73 - 24197627 AAGUAUAUGUUUGUGUCGCGGGGAUACUGGCAUUUGGGUAAGAGAGGGGGGAGGGGCUGAAGUGCCUGCCCCA ...((.((((..(((((.....)))))..)))).))..........((((.(((.((....)).))).)))). ( -26.10, z-score = -1.77, R) >droSec1.super_2 5145718 70 - 7591821 AAGUGUGUGUUUGUGUCCCGGCGAUACUGGCUGCUGGGUGAGA---GGGGAAGGUGCUGAAGUUCCUGCCCCA ................(((((((........))))))).....---((((.(((.((....)).))).)))). ( -24.10, z-score = -1.06, R) >droSim1.chr3L 4714700 70 - 22553184 AAGUGUGUGUUUGUGUCCCGGGGAUACUGGCUGCCGGGUGAGA---GGGGAAGGUGCUGAAGUUCCUGCCCCA ................(((((.(........).))))).....---((((.(((.((....)).))).)))). ( -22.50, z-score = -0.02, R) >consensus AAGUGUAUGUUUGUGUCCCGGGGAUACUGGCUGCUGGGUAAGA___GGGGAAGGUGCUGAAGUUCCUGCCCCA ........((..(((((.....)))))..))...............((((.(((.((....)).))).)))). (-21.80 = -21.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:28 2011