| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,182,517 – 5,182,624 |
| Length | 107 |
| Max. P | 0.979795 |
| Location | 5,182,517 – 5,182,624 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 95.70 |
| Shannon entropy | 0.07727 |
| G+C content | 0.35327 |
| Mean single sequence MFE | -27.08 |
| Consensus MFE | -25.60 |
| Energy contribution | -25.16 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.979795 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5182517 107 + 24543557 UUAUGGAUUUCUGUUUGUGUUCGGUUUAUUUUUAGGAAAUAUGUGAUAAGAGCGAACUUUAGAUAAACAUGCCGAGGGUAAACAGAUUUACCGCCAUUAAUGGGAAA ....(((..((((((((..((((((((((((..((.....................))..))))))....))))))..))))))))..).)).(((....))).... ( -23.40, z-score = -1.23, R) >droSim1.chr3L 4705422 107 + 22553184 UUAUGGAUUUCUGUUUGCGUUCGGUUUAUUUUUAGGAAAUGUGUGAUAAGAGCGAACUUUAGAUAAACAUGCUGAGGGUAAACAGAUUUACCGCCAUUAAUGGGAAA ....(((..(((((((((.((((((((((((..((......(((.......)))..))..))))))....)))))).)))))))))..).)).(((....))).... ( -26.30, z-score = -2.09, R) >droSec1.super_2 5136417 107 + 7591821 UUAUGGAUUUCUGUUUGCGUUCGGUUUAUUUUUAGGAAAUUUGUGAUAAGAGCGAACUUUAGAUAAACAUGCCGAGGGUAAACAGAUUUACCGCCAUUAAUGGGAAA ....(((..(((((((((.((((((...(((....(((.(((((.......))))).)))....)))...)))))).)))))))))..).)).(((....))).... ( -29.60, z-score = -3.12, R) >droYak2.chr3L 5744259 107 + 24197627 UUAUGGAUUUCUGUUUGCGUUUGGGUUAUUUUUAGGAAAUAUGUGAUAAGAGCGAACUUUAGAUAAACACGCCAAGGGUAAACAGAUUUACCGCCAUUAAUGGGAAA ....(((..(((((((((.((((((((((((..((.....................))..)))))...)).))))).)))))))))..).)).(((....))).... ( -24.50, z-score = -1.60, R) >droEre2.scaffold_4784 7875525 107 + 25762168 UUAUGGAUUUCUGUUUGCGUUCGGUUUAUUUUUAGAAAAUUCGUGAUAAGAGUGAACUUUAGAUAAACACGCCGAGGGUAAACAGAUUUACCGCCAUUAAUGGGAAA ....(((..(((((((((.((((((((((((..((...((((.......))))...))..))))))....)))))).)))))))))..).)).(((....))).... ( -31.60, z-score = -3.71, R) >consensus UUAUGGAUUUCUGUUUGCGUUCGGUUUAUUUUUAGGAAAUAUGUGAUAAGAGCGAACUUUAGAUAAACAUGCCGAGGGUAAACAGAUUUACCGCCAUUAAUGGGAAA ....(((..(((((((((.((((((((((((..((.....................))..))))))....)))))).)))))))))..).)).(((....))).... (-25.60 = -25.16 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:26 2011