| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,333,492 – 4,333,545 |
| Length | 53 |
| Max. P | 0.980792 |
| Location | 4,333,492 – 4,333,545 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 70.57 |
| Shannon entropy | 0.52768 |
| G+C content | 0.33023 |
| Mean single sequence MFE | -11.94 |
| Consensus MFE | -6.58 |
| Energy contribution | -7.22 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.06 |
| SVM RNA-class probability | 0.980792 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4333492 53 - 23011544 AGAUACUGAUGUAGCUGAUGCUCCCAGUUAUCUGAUGUAUAUAGUAUCUACUU ((((((((.((((((....))...(((....)))...)))))))))))).... ( -12.30, z-score = -1.55, R) >droYak2.chr2L 4365174 53 - 22324452 AGAUACUUUUGUAUCUGACGCUCUGCCUUGCCAGAUACACGUAGUAUCUACUU (((((((..((((((((..((........))))))))))...))))))).... ( -18.70, z-score = -5.19, R) >droSec1.super_5 2431009 53 - 5866729 AGAUACUGCUGUAUCUGAUACUCUUAGUUAUCUGAUGUAUAUAGUAUCUUCUU ((((((((...((((.((((........)))).))))....)))))))).... ( -11.20, z-score = -1.55, R) >droSim1.chr2L 4254734 53 - 22036055 AGAUACUGCUGUAUCUGAUGCUCUUAGUUAUCUGAUGUAUAUAGUAUCUUCUU ((((((((...((((.(((((.....).)))).))))....)))))))).... ( -11.10, z-score = -1.47, R) >droMoj3.scaffold_6680 18465042 51 - 24764193 AUAUUCCUAUCAAGGUUAUGCU-UGAAGUAUUU-AUAAAUGUGAUAUGCAUUU .........(((((......))-))).......-..((((((.....)))))) ( -6.40, z-score = -0.09, R) >consensus AGAUACUGAUGUAUCUGAUGCUCUGAGUUAUCUGAUGUAUAUAGUAUCUACUU (((((((..((((((.((((........)))).))))))...))))))).... ( -6.58 = -7.22 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:12 2011