| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,137,545 – 5,137,647 |
| Length | 102 |
| Max. P | 0.762111 |
| Location | 5,137,545 – 5,137,647 |
|---|---|
| Length | 102 |
| Sequences | 13 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 64.21 |
| Shannon entropy | 0.76855 |
| G+C content | 0.58026 |
| Mean single sequence MFE | -38.15 |
| Consensus MFE | -13.23 |
| Energy contribution | -12.43 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.88 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.762111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5137545 102 + 24543557 --CGGACAUCAGCAAAUUGGCGGCUGCACUGGCCGCCUUGGGGCUGGUGAACAGCGGCAUUCCCAUAAACGUGGGUAUCUGCUGAUCCCUU-GGCACUCCCGUCG------------- --.((((((((((.....(((((((.....))))))).....)))))))..((((((.((.(((((....))))).)))))))).)))...-(((......))).------------- ( -46.90, z-score = -3.15, R) >anoGam1.chr2L 22321251 85 - 48795086 AUGCACCUGCACCAACGCUCCCGCCAGAC-AUUUGCUGCCGUGC-GGCGUACAGUGGCAUGCCCAUGAACUUGGGUAUUUCUUUGGG------------------------------- .(((....)))........(((((((...-...((((((...))-)))).....))))(((((((......)))))))......)))------------------------------- ( -27.70, z-score = -0.29, R) >droGri2.scaffold_15110 6910426 113 + 24565398 --CCGAGUACAGCGAACUGGCCGCCGCACUGGCUGCUUUCACAUUCGUGAACAAGGGCAUACCCAUAAAAGUGGGUAUCUGUUGUUGCUGCACCGACGUC---UGGGCACUCAUUUUG --..((((..(((((...(((.(((.....))).)))(((((....)))))(((.((.((((((((....)))))))))).))))))))((.(((.....---)))))))))...... ( -38.60, z-score = -1.40, R) >droMoj3.scaffold_6680 11510081 116 + 24764193 --CCGCUUGCAGCAAACUGGCAGCUGCAGUGGCUGCUUUCGCAUUGGUAAACAAUGGCAUGCCCAUGAAUGUGGGUAUCUGCUGCUGCUGCUGUUGCGUCGGCUGAGUGCUCAGUCUG --.(((..((((((.....(((((.((((..(((((....))((((.....)))))))((((((((....)))))))))))).))))))))))).)))..((((((....)))))).. ( -49.40, z-score = -1.55, R) >droVir3.scaffold_13049 7857040 113 + 25233164 --CCGCCUGCAGCAGGCUGGCCGCCGCACUCGCUGCCUUCACGUUGGUAAACAAGGGCAUGCCCAUGAAAGUAGGUAUUUGCUGCUGCGCCGACGACGACUGACCACCUACCUUG--- --..(((((...))))).(((.((.......)).)))....(((((((...((.(((....))).))..(((((.......)))))..)))))))....................--- ( -32.90, z-score = 1.21, R) >droWil1.scaffold_180955 193296 96 - 2875958 --CCGCUUGUUGUACUGAUGCUGCCGCUGAAGCUGCCUUAACAUUGGUAAAAAGCGGCAUACCCAUAAAUUUGGGUAUUUGCUGCUCUCUACUACUCG-------------------- --......((.(((..((.((.((((((.....((((........))))...))))))(((((((......))))))).....))))..))).))...-------------------- ( -30.40, z-score = -3.56, R) >droPer1.super_23 1275058 102 + 1662726 --CUGAUUGAAGCAAGCUUGCUGCGGCAGUGGCCACCUUCGGGCUGGUGAACAAUGGCAUGCCCAUGAAUGUUGGCAUCUGCUGAUCCUUG-GGCACAUUCGUCG------------- --........((((....)))).((((((((((((((....)).))))...........((((((.....((..((....))..))...))-)))))))).))))------------- ( -33.40, z-score = 0.44, R) >dp4.chrXR_group3a 1253449 102 + 1468910 --CUGAUUGAAGCAAGCUUGCUGCGGCAGUGGCCACCUUCGGGCUGGUGAACAAUGGCAUGCCCAUGAAUGUUGGCAUCUGCUGAUCCUUG-GGCACAUUCGUCG------------- --........((((....)))).((((((((((((((....)).))))...........((((((.....((..((....))..))...))-)))))))).))))------------- ( -33.40, z-score = 0.44, R) >droAna3.scaffold_13337 9894522 96 - 23293914 --------CUAGCAGAUUGGCGGCCGCACUGGCAACCUUUGCACUGGUGAACAAUGGCAUUCCCAUAAAGGUGGGAAUCUGCUGAUCUCUA-GGUACUCCCGCCG------------- --------..........(((((..(((..((...))..))).((((.((.((..((.((((((((....))))))))))..)).)).)))-)......))))).------------- ( -34.20, z-score = -1.63, R) >droEre2.scaffold_4784 7830409 102 + 25762168 --CGGAGAUCAGCAAACUGGCGGCCGCACUGGCCGCCUUUGGACUGGUGAACAGCGGCAUUCCCAUGAACGUAGGCAUCUGCUGAUCCCUC-GGCACGCCCGUCG------------- --.((.((((((((....(((((((.....)))))))...(((.((.((.....)).)).)))................)))))))))).(-(((......))))------------- ( -39.10, z-score = -0.77, R) >droYak2.chr3L 5698982 102 + 24197627 --CGGACAUCAACAAAUUGGCGGCUGCACUGGCCGCCUUUGGGCUGGUGAACAGCGGCAUUCCCAUAAACGUAGGCAUCUGUUGAUCCCUC-GGCACGCCCGUCG------------- --..(((...........(((((((.....)))))))...(((((((.(((........))))))....((.(((.(((....))).))))-)....))))))).------------- ( -36.40, z-score = -0.67, R) >droSec1.super_2 5089570 102 + 7591821 --CGGUCAUCAGCAAAUUGGCCGCUGCACUGGCCGCCUUGGGGCUGGUGAACAGCGGCAUUCCCAUAAACGUGGGCAUCUGCUGAUCCCUC-GGCACGCCCGUCG------------- --.((..(((((((...((((((((((((..(((.(....))))..)))..)))))))...(((((....)))))))..))))))).)).(-(((......))))------------- ( -46.80, z-score = -2.44, R) >droSim1.chr3L 4659082 102 + 22553184 --CGGUCAUCAGCAAAUUGGCCGCUGCACUGGCCGCCUUGGGGCUGGUGAACAGCGGCAUUCCCAUAAACGUGGGCAUCUGCUGAUCCCUC-GGCACGCCCGUCG------------- --.((..(((((((...((((((((((((..(((.(....))))..)))..)))))))...(((((....)))))))..))))))).)).(-(((......))))------------- ( -46.80, z-score = -2.44, R) >consensus __CCGACUGCAGCAAACUGGCCGCCGCACUGGCCGCCUUCGGGCUGGUGAACAGCGGCAUUCCCAUAAACGUGGGCAUCUGCUGAUCCCUC_GGCACGCCCGUCG_____________ ........((((((........(((((....))((((........))))......)))...((..........))....))))))................................. (-13.23 = -12.43 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:20 2011