| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,092,631 – 5,092,728 |
| Length | 97 |
| Max. P | 0.787345 |
| Location | 5,092,631 – 5,092,728 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 77.73 |
| Shannon entropy | 0.41201 |
| G+C content | 0.37147 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -11.76 |
| Energy contribution | -12.73 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.787345 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5092631 97 + 24543557 ----UUCACGAAAUGUGAUAUGCAUUUCAGUGAAAGUUUUGCUUUCGCCAAA-GUGCUGAAUACGUUUUCCCGGAAAAAGUUA-CUGUCACGCAAAAUUCAUU ----..........((((((.((((((..(((((((.....)))))))..))-)))).....((.(((((...))))).))..-.))))))............ ( -21.60, z-score = -1.30, R) >droAna3.scaffold_13337 9858852 91 - 23293914 AAAUUUUAUAUAAACUCUCGUG-GUCUGUUUGGCAAGUUGGCUUUCAGAAAU--GGCCAAGUACUUUUGCC---AGAUUGUUAGUUUUUAUAGAAAA------ ...(((((((.(((((..((..-....((((((((((((((((.........--)))))).....))))))---))))))..))))).)))))))..------ ( -23.80, z-score = -2.66, R) >droEre2.scaffold_4784 7795686 94 + 25762168 ----UUCACGAAAUGUGAUAUGCAUUCCGGUGAAAGUUUUGCUUUCACCAAA-GUGCUGAAUACUUCUUCCCGGAAAAAGUUA-CUGUCACGCAAAAUUC--- ----..........((((((.(((((..((((((((.....))))))))..)-)))).....((((.(((...))).))))..-.)))))).........--- ( -24.60, z-score = -2.84, R) >droYak2.chr3L 5666042 95 + 24197627 ----UGCACGAAAUGUGAUAUGCAUUCCAGUGAAAGUUUUGCUUUCACCAAAAGUGCUGAAUACAUUUUCCCCAACAAAGUUA-CUGUCACGCAAAAUUA--- ----(((..((((((((....(((((...(((((((.....)))))))....)))))....)))))))).....(((......-.)))...)))......--- ( -20.40, z-score = -1.95, R) >droSec1.super_2 5058459 94 + 7591821 ----UUCACGAAAUGUGAUAUGCAUUCCAGUGAAAGUUUUGCUUUCACCAAA-GUGCUGAAUACGUUUUCCCGGAAAAAGUUA-CUGUCACGCAAAAUUC--- ----..........((((((.(((((...(((((((.....)))))))...)-)))).....((.(((((...))))).))..-.)))))).........--- ( -19.90, z-score = -1.26, R) >droSim1.chr3L 4627522 94 + 22553184 ----UUCACGAAAUGUGAUAUGCAUUCCAGUGAAAGUUUUGCUUUCACCAAA-GUGCUGAAUACGUUUUCCCGGAAAAAGUUA-CUGUCACGCAAAAUUC--- ----..........((((((.(((((...(((((((.....)))))))...)-)))).....((.(((((...))))).))..-.)))))).........--- ( -19.90, z-score = -1.26, R) >consensus ____UUCACGAAAUGUGAUAUGCAUUCCAGUGAAAGUUUUGCUUUCACCAAA_GUGCUGAAUACGUUUUCCCGGAAAAAGUUA_CUGUCACGCAAAAUUC___ .........((((((((....((((....(((((((.....))))))).....))))....)))))))).................................. (-11.76 = -12.73 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:15 2011