| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,076,414 – 5,076,511 |
| Length | 97 |
| Max. P | 0.967648 |
| Location | 5,076,414 – 5,076,511 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 76.81 |
| Shannon entropy | 0.40994 |
| G+C content | 0.47848 |
| Mean single sequence MFE | -28.99 |
| Consensus MFE | -17.52 |
| Energy contribution | -17.92 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.79 |
| SVM RNA-class probability | 0.967648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5076414 97 - 24543557 ------------UCAGUUCGGAAC--CGAUAGCGGAUGCAGUUGGCAAAGGAAGCCUUGACCAUCCGCUCCAAUUGUUCCGACGCGCUUCCUUUGCUAAGCAAUUAAAAAA-- ------------...(((((((((--.(((((((((((.....(((.......))).....))))))))...)))))))))).))((((........))))..........-- ( -30.70, z-score = -2.24, R) >droWil1.scaffold_180698 1191355 113 + 11422946 UGUUGCAGUAUAAAAACAAAAAACAACAAAAGUGAAGUGAACGCGAAAGAGAAGGAAGAACCCUUCUCCAUAUCCUUUUGUUGUCUAUACGUAUGCAAAGCAAUUAAAAUAGC .(((((.(((((..........((((((((((.((.(((....(....)((((((......)))))).))).)))))))))))).......)))))...)))))......... ( -28.53, z-score = -4.58, R) >droSim1.chr3L 4611281 97 - 22553184 ------------UCAGUUCGGAAC--CGAUAGCGGAUGCAGCUGGCAAAGGAAGCCCUGACCAUCCGCUCCAAUUGUUCCGACGCGCUUCCUUUGCUAAGCAAUUAAAAAA-- ------------...(((((((((--.((((((((((((((..(((.......))))))..))))))))...)))))))))).))((((........))))..........-- ( -31.10, z-score = -2.21, R) >droSec1.super_2 5042181 97 - 7591821 ------------UCAGUUCGGAAC--CGAUAGCGGAUGCAGCUGGCAAAGGAAGCCCUGACCAUCCGCUCCAAUUGUUCCGACGCGCUUCCUUUGCUAAGCAAUUAAAAAA-- ------------...(((((((((--.((((((((((((((..(((.......))))))..))))))))...)))))))))).))((((........))))..........-- ( -31.10, z-score = -2.21, R) >droYak2.chr3L 5649280 97 - 24197627 ------------UCAGUUCGCCAC--CGAUAGCGGAUGCAGCUGCCAAAGGAAGCCCUGACCAUCCGCUCCAAUUGUUCCGACGCGCUUCCUUUGCUAAGCAAUUAAAAAA-- ------------...((((((...--.....))))))...(((..((((((((((...(......)((((..........)).))))))))))))...)))..........-- ( -24.30, z-score = -0.96, R) >droEre2.scaffold_4784 7779262 97 - 25762168 ------------UCAGUUCGGAGC--CGAUAGCGGAUGCAGCUGCCAAAGGAAGCCCUGACCAUCCGCUCCAAUUGUUCCGACGCGCUUCCUUUGCUAAGCAAUUAAAAAA-- ------------...(((((((((--.((((((((((((((..((........)).)))..))))))))...)))))))))).))((((........))))..........-- ( -28.20, z-score = -1.33, R) >consensus ____________UCAGUUCGGAAC__CGAUAGCGGAUGCAGCUGGCAAAGGAAGCCCUGACCAUCCGCUCCAAUUGUUCCGACGCGCUUCCUUUGCUAAGCAAUUAAAAAA__ .................(((((((......((((((((..(((.........)))......))))))))......)))))))...((((........))))............ (-17.52 = -17.92 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:12 2011