| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,332,704 – 4,332,823 |
| Length | 119 |
| Max. P | 0.741714 |
| Location | 4,332,704 – 4,332,823 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.91 |
| Shannon entropy | 0.22061 |
| G+C content | 0.43210 |
| Mean single sequence MFE | -31.28 |
| Consensus MFE | -26.41 |
| Energy contribution | -25.97 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.741714 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4332704 119 + 23011544 AUAUUGUAGAAUCACGUUUUGGCUUUGUUUGAGAUAUGAUAUGCAAUCCAAAUGGGGGAGGGACAAAAUGUGGAAAGUGGGGGGAGGGAGGAUUACUCAUGCUGAUAUCAGCUCCCCUC- ...........((((((((((.(((..((((.(((.((.....)))))))))..)))......)))))))))).....(((((((..(((.....)))..((((....)))))))))))- ( -37.30, z-score = -2.05, R) >droSim1.chr2L 4253934 106 + 22036055 -----AUAGAAUCACGUUUUGGCUUUGUUUGAGAUAUGAUAUGCAAUCCAAUAGGGGG----ACAAAAUGUGGAAACUGGGGGGAGG----AUUACUCACACUGCUAUCAGCUCCCCUC- -----......((((((((((.((((.((((.(((.((.....)))))))).).))))----.)))))))))).....((((((..(----((..(.......)..)))..))))))..- ( -29.10, z-score = -0.89, R) >droSec1.super_5 2430223 106 + 5866729 -----AUAGAAUCACGUUUUGGCUUUGUUUGAGAUAUGAUAUGCAAUCCAAUAGGGGG----ACAAAAUGUGGAAACUGGGGGGAGG----AUUACUCACACUGAUAUCAGCUCCCCUC- -----......((((((((((.((((.((((.(((.((.....)))))))).).))))----.)))))))))).....(((((((((----(....))...(((....)))))))))))- ( -30.40, z-score = -1.40, R) >droYak2.chr2L 4364342 103 + 22324452 -----AUAGAAUCACGUUUUGGCUUUGUUUGAGAUAUGAUAUGCAAUUUAAUAGGAG-------AAAAUGUGGAAACUGGGGGGAGG----AUUACUCAUGCUGCUAUCAGCUCCCCUC- -----......(((((((((..(((...(((((...((.....)).))))).)))..-------))))))))).....((((((((.----....)))..((((....)))).))))).- ( -24.60, z-score = -0.33, R) >droEre2.scaffold_4929 4409546 100 + 26641161 -----AUAGAAUCACGUUUUGGCUUUGUUUGAGAUAUGAUAUGCAACCCAAUAGGGG-----ACAAAAUGUGGAAACAGGGGGGAGG----AUUACUCA------UAUCACCUCCCCUCU -----......((((((((((((..((((........)))).))..(((....))).-----.))))))))))....((((((((((----........------.....)))))))))) ( -35.02, z-score = -3.01, R) >consensus _____AUAGAAUCACGUUUUGGCUUUGUUUGAGAUAUGAUAUGCAAUCCAAUAGGGGG____ACAAAAUGUGGAAACUGGGGGGAGG____AUUACUCACACUGAUAUCAGCUCCCCUC_ ...........((((((((((((..((((........)))).))..(((....))).......)))))))))).....((((((((.........................)))))))). (-26.41 = -25.97 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:11 2011