| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,072,693 – 5,072,754 |
| Length | 61 |
| Max. P | 0.978244 |
| Location | 5,072,693 – 5,072,754 |
|---|---|
| Length | 61 |
| Sequences | 8 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 75.72 |
| Shannon entropy | 0.51053 |
| G+C content | 0.44098 |
| Mean single sequence MFE | -17.55 |
| Consensus MFE | -9.38 |
| Energy contribution | -11.04 |
| Covariance contribution | 1.66 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.978244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5072693 61 + 24543557 GCAUAAUAACAAGAAGUUAUUGUGCCUCUGUCCACAUGCAACUGCAGCAGCAA---UGCAACAA ((((((((((.....))))))))))...........(((....)))(((....---)))..... ( -17.70, z-score = -2.16, R) >droAna3.scaffold_13337 3151120 60 + 23293914 GCAUAAUAACAAGAAGUUAUUGUGCCUCUGUCUACAUGCAA-UGCAACUGCUGCAACACAA--- ((((((((((.....))))))))))...........((((.-.((....))))))......--- ( -15.50, z-score = -1.85, R) >droEre2.scaffold_4784 7775514 61 + 25762168 GCAUAAUAACAAGAAGUUAUUGUGCCUCUGUCCACAUGCAACUGCAGCAGCAG---UGCAACAA ((((((((((.....))))))))))...........((((.((((....))))---)))).... ( -21.10, z-score = -3.04, R) >droYak2.chr3L 5645192 64 + 24197627 GCAUAAUAACAAGAAGUUAUUGUGCCUCUGUCCACAUGCAACUGCAGCAGCAGCAGUGCAACAA ((((((((((.....))))))))))...........((((.((((.......)))))))).... ( -20.80, z-score = -2.27, R) >droSec1.super_2 5038506 61 + 7591821 GCAUAAUAACAAGAAGUUAUUGUGCCUCUGUCCACAUGCAACUGCAGCAGCAG---UGCAACAA ((((((((((.....))))))))))...........((((.((((....))))---)))).... ( -21.10, z-score = -3.04, R) >droSim1.chr3L 4607558 61 + 22553184 GCAUAAUAACAAGAAGUUAUUGUGCCUCUGUCCACAUGCAACUGCAGCAGCAG---UGCAACAA ((((((((((.....))))))))))...........((((.((((....))))---)))).... ( -21.10, z-score = -3.04, R) >droWil1.scaffold_180698 1186686 51 - 11422946 --------ACACUCU-UUACUACCGCAUUGUGCACAUGCAACUGU-GUGGCAA---CACAAUGG --------.......-.........(((((((..(((((....))-)))....---))))))). ( -12.00, z-score = -0.78, R) >droMoj3.scaffold_6680 1890374 60 + 24764193 GCAUAAUAACAAGAAGUUAAC-UGUGCCCGUGCACAUGCAACUGCAGUAACUCUGACCCAA--- ...........(((.((((..-(((((....)))))(((....))).))))))).......--- ( -11.10, z-score = -0.61, R) >consensus GCAUAAUAACAAGAAGUUAUUGUGCCUCUGUCCACAUGCAACUGCAGCAGCAG___UGCAACAA ((((((((((.....))))))))))..((((.....(((....)))...))))........... ( -9.38 = -11.04 + 1.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:12 2011