| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,057,862 – 5,057,915 |
| Length | 53 |
| Max. P | 0.631342 |
| Location | 5,057,862 – 5,057,915 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 94.97 |
| Shannon entropy | 0.06931 |
| G+C content | 0.51572 |
| Mean single sequence MFE | -12.00 |
| Consensus MFE | -9.91 |
| Energy contribution | -9.80 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.631342 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5057862 53 + 24543557 UUCUAGCCACACACACCUGCUAGGGUAACCUCUUUCGCAGCUCUCUGCUCAUC (((((((...........)))))))...........((((....))))..... ( -9.20, z-score = -1.07, R) >droSec1.super_2 5023707 53 + 7591821 UUCUACCCACACACACCUGGUAGGGUAACCUCUUUCAGAGCUCUCUGCUCAUC ...(((((((.((....)))).)))))..........((((.....))))... ( -13.40, z-score = -2.43, R) >droSim1.chr3L 4592331 53 + 22553184 UUCUACCCACACACACCUGGUAGGGUAACCUCUUUCAGAGCUCUCUGCUCAUC ...(((((((.((....)))).)))))..........((((.....))))... ( -13.40, z-score = -2.43, R) >consensus UUCUACCCACACACACCUGGUAGGGUAACCUCUUUCAGAGCUCUCUGCUCAUC (((((((...........)))))))............((((.....))))... ( -9.91 = -9.80 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:10 2011