| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,057,648 – 5,057,741 |
| Length | 93 |
| Max. P | 0.500000 |
| Location | 5,057,648 – 5,057,741 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 75.54 |
| Shannon entropy | 0.46357 |
| G+C content | 0.48078 |
| Mean single sequence MFE | -28.58 |
| Consensus MFE | -17.15 |
| Energy contribution | -16.97 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 5057648 93 - 24543557 GGCAUUUUCC-------CCAGGUAGCCCAGUCUAAAUCAAGGCUGAUGGCAAAUCGAAGCCAAUAAUUGAGUGU--UGCCAUGUUUGGUUAGAGGCAAAUGG ..(((((.((-------.(...(((((((((((......))))))(((((((.((((.........))))...)--))))))....)))))).)).))))). ( -26.00, z-score = -0.79, R) >droSec1.super_2 5023493 93 - 7591821 GGCAUUUUCC-------CCAGGUAGCCCAGUCUAAAUCAAGGCUGAUGGCAAAUCGAAGCCAAUAAUUGAGUGU--UGCCAUGUUUGGUUAGAGGCAAAUGG ..(((((.((-------.(...(((((((((((......))))))(((((((.((((.........))))...)--))))))....)))))).)).))))). ( -26.00, z-score = -0.79, R) >droSim1.chr3L 4592117 93 - 22553184 GGCAUUUUCC-------CCAGGUAGCCCAGUCUAAAUCAAGGCUGAUGGCAAAUCGAAGCCAAUAAUUGAGUGU--UGCCAUGUUUGGUUAGAGGCAAAUGG ..(((((.((-------.(...(((((((((((......))))))(((((((.((((.........))))...)--))))))....)))))).)).))))). ( -26.00, z-score = -0.79, R) >droYak2.chr3L 5629840 93 - 24197627 GACAUUUUCC-------CCAGGUAGCCAAGUCUAAAUCAAGCCUGAUGGCAAAUCGAAGCCAAUAAUUGAGUGU--UGCCAUGUUUGGUUAGAGGCAAAUGG ..........-------(((..(.(((...(((((.((((((...(((((((.((((.........))))...)--)))))))))))))))))))))..))) ( -24.90, z-score = -1.42, R) >droEre2.scaffold_4784 7757156 100 - 25762168 GGCAUUUUCCCCAGGUGCCAGGUAGCCCAGUCCGAAUCAAGGCUGAUGGCAAAUCGAAGCCAAUAAUUGAGUGU--UGCCAUGUUUGGUUAGAGGCAAAUGG ..........(((..((((...((((((((((........)))))(((((((.((((.........))))...)--))))))....)))))..))))..))) ( -30.70, z-score = -0.94, R) >dp4.chrXR_group8 3216718 97 - 9212921 -----UGCCUUGGAACUAGAGAUCAUUGAGGCUGCAGCAAGGCUCCUUCCUGGGUGUAAUUGAGUGCCAUGUGCCGUGUGCCGUGUGGCAUGUGGCAUGUGG -----.((((.((((...(....)...(((.((......)).))).)))).))))...........((((((((((..((((....))))..)))))))))) ( -37.90, z-score = -1.54, R) >consensus GGCAUUUUCC_______CCAGGUAGCCCAGUCUAAAUCAAGGCUGAUGGCAAAUCGAAGCCAAUAAUUGAGUGU__UGCCAUGUUUGGUUAGAGGCAAAUGG .................(((....(((((((((......))))))..)))........(((..((((((((..(......)..))))))))..)))...))) (-17.15 = -16.97 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:09 2011