| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,005,063 – 5,005,155 |
| Length | 92 |
| Max. P | 0.639972 |
| Location | 5,005,063 – 5,005,155 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 93.58 |
| Shannon entropy | 0.11917 |
| G+C content | 0.40263 |
| Mean single sequence MFE | -17.08 |
| Consensus MFE | -15.48 |
| Energy contribution | -15.87 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639972 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5005063 92 + 24543557 GCAAUGGCUGACCUUGUAUCCCUUUUUUUU-----CUAAAUAGACAAUUUGCCCAUCUUUACGCACUAUUGUUUUGUAUUCUCGGGGCGAUGUCUUG ((((.((....)))))).............-----......(((((..((((((.....((((.((....))..))))......))))))))))).. ( -18.10, z-score = -1.45, R) >droSim1.chr3L 4552164 92 + 22553184 GCAAUGGCUGACCUUGUAUCCCUUUUUUUU-----CUAAAUAGACAAUUUGCCCAUCUUUACGCACUAUUGUUUUGUAUUCUCCGGGCGAUGUCUUG ((((.((....)))))).............-----......(((((..((((((.....((((.((....))..))))......))))))))))).. ( -17.00, z-score = -1.61, R) >droSec1.super_2 4984978 91 + 7591821 GCAAUGGCUAACCUUGUAUCCCUUUUUUU------CUAAAUAGACAAUUUGCCCAUCUUUACGCACUAUUGUUUUGUAUUCUCCGGGCGAUGUCUUG ((((.((....))))))............------......(((((..((((((.....((((.((....))..))))......))))))))))).. ( -17.00, z-score = -1.94, R) >droYak2.chr3L 5589359 97 + 24197627 GCAAUGGCUGACCUUGUAUCCCUUUUUUUUUUCUUCUAAAUGGACAAUUUGCCCAUCUUUACGCACUAUUGUUUUGUAUUCUCGGGGCGAUGUCUUG ((((.((....))))))........................(((((..((((((.....((((.((....))..))))......))))))))))).. ( -18.10, z-score = -1.21, R) >droEre2.scaffold_4784 7718613 90 + 25762168 GCAAUGGCUGACCUUGUAUCCCUUUUUUU------CUAAAUAGACAAUUUGCCCAUCUUUACGCACUAUUGUUUUGUAUUCUC-GGGCGAUGUCUUG ((((.((....))))))............------......(((((..((((((.....((((.((....))..)))).....-))))))))))).. ( -17.60, z-score = -1.81, R) >droAna3.scaffold_13337 3096603 87 + 23293914 GCAAUGGCUGACCUUGUAUCCCUUUUU--------CUAAAUAGACAAUUUGCCCAUCUUUACGCACUAUUGUUUUGUAUUCUCGAGGCGAUGUGG-- ((....)).....(..((((((((...--------......(((((((.(((..........)))..))))))).........)))).))))..)-- ( -14.67, z-score = -0.07, R) >consensus GCAAUGGCUGACCUUGUAUCCCUUUUUUU______CUAAAUAGACAAUUUGCCCAUCUUUACGCACUAUUGUUUUGUAUUCUCGGGGCGAUGUCUUG ((((.((....))))))........................(((((..((((((.....((((.((....))..))))......))))))))))).. (-15.48 = -15.87 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:04 2011