| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,988,555 – 4,988,661 |
| Length | 106 |
| Max. P | 0.784748 |
| Location | 4,988,555 – 4,988,661 |
|---|---|
| Length | 106 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.12 |
| Shannon entropy | 0.15257 |
| G+C content | 0.45447 |
| Mean single sequence MFE | -35.03 |
| Consensus MFE | -22.97 |
| Energy contribution | -23.05 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4988555 106 + 24543557 UAUCAAGUAACUGAGCCGCGCCAAGCGGCUGC-AUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAGCU------CUUG---GCACACAAAACA---- ..(((......)))...(.((((((.((((((-((((((((((((....((..(((....)))..))..))))))))))....))))))))------))))---)).)........---- ( -37.80, z-score = -3.43, R) >droSim1.chr3L 4535613 106 + 22553184 UAUCAAGUAACUGAGCCGCGCCAAGCGGCUGC-AUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAGCU------CUUG---GCACACAAAACA---- ..(((......)))...(.((((((.((((((-((((((((((((....((..(((....)))..))..))))))))))....))))))))------))))---)).)........---- ( -37.80, z-score = -3.43, R) >droSec1.super_2 4968629 106 + 7591821 UAUCAAGUAACUGAGCCGCGCCAAGCGGCUGC-AUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAGCU------CUUG---GCACACAAAACA---- ..(((......)))...(.((((((.((((((-((((((((((((....((..(((....)))..))..))))))))))....))))))))------))))---)).)........---- ( -37.80, z-score = -3.43, R) >droYak2.chr3L 5572089 110 + 24197627 UAUCAAGUAACUGAGCCGCGCCAAGCGGCUGC-AUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAGCU------CUUG---GCACACAAAACACACA ..(((......)))...(.((((((.((((((-((((((((((((....((..(((....)))..))..))))))))))....))))))))------))))---)).)............ ( -37.80, z-score = -3.25, R) >droEre2.scaffold_4784 7699865 106 + 25762168 UAUCAAGUAACUGAGCCGCGCCAAGCGGCUGC-AUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAGCU------CUUG---GCACACAAAACA---- ..(((......)))...(.((((((.((((((-((((((((((((....((..(((....)))..))..))))))))))....))))))))------))))---)).)........---- ( -37.80, z-score = -3.43, R) >droAna3.scaffold_13337 3078873 106 + 23293914 UAUCAAGUAACUGAGCCGCGCCAAGCGACAGC-AUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAGCU------CUUG---GCACACAAAACA---- ..(((......)))...(.((((((.(...((-((((((((((((....((..(((....)))..))..))))))))))....))))..).------))))---)).)........---- ( -29.20, z-score = -1.21, R) >dp4.chrXR_group8 3149036 116 + 9212921 UAUCAAGUAACUGAGCCGCGCCAAGCGGCAACCAUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAGCUACAGCUCUUGCCGGCACACAAACCA---- ......(((.(((.(((((.....)))))......((((((((((....((..(((....)))..))..)))))))))).......))).))).(((......)))..........---- ( -32.10, z-score = -1.02, R) >droPer1.super_209 31365 116 - 64652 UAUCAAGUAACUGAGCCGCGCCAAGCGGCAACCAUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAGCUACAGCUCUUGCCGGCACACAAACCA---- ......(((.(((.(((((.....)))))......((((((((((....((..(((....)))..))..)))))))))).......))).))).(((......)))..........---- ( -32.10, z-score = -1.02, R) >droVir3.scaffold_12758 741042 103 + 972128 UAUCAAGUAACUGAGCCGCGCCAAGCUGC----AUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAGCU------CUUG---GCACACAAACAG---- ..(((......)))...(.((((((((((----((((((((((((....((..(((....)))..))..))))))))))....))))))))------..))---)).)........---- ( -33.30, z-score = -2.70, R) >droMoj3.scaffold_6680 1805862 103 + 24764193 UAUCAAGUAACUGAGCCGCGCCGAGCUGC----AUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAGCU------CUUG---GCACACAAACAG---- ..(((......)))...(.((((((((((----((((((((((((....((..(((....)))..))..))))))))))....))))))))------)..)---)).)........---- ( -34.60, z-score = -2.91, R) >droWil1.scaffold_180698 1106157 103 - 11422946 UAUCAAGUAACUGAGCCGCGCCGAGUUGC----AUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAGCU------CUUG---GCAUACAAACAG---- ..(((......)))((((....(((((((----((((((((((((....((..(((....)))..))..))))))))))....))))))))------).))---))..........---- ( -31.90, z-score = -2.33, R) >droGri2.scaffold_15110 23809054 103 - 24565398 UAUCAAGUAAGUGAGCCGCGCCGAGCUGC----AUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAGCU------CUUG---GCACACAAACAG---- ......((..(((.((((....(((((((----((((((((((((....((..(((....)))..))..))))))))))....))))))))------).))---)).)))..))..---- ( -38.20, z-score = -3.75, R) >consensus UAUCAAGUAACUGAGCCGCGCCAAGCGGCUGC_AUAGUGAAAAUGCAACUGUGCGGAAAACUGUGCGAACAUUUUCAUUUUCAAUGCAGCU______CUUG___GCACACAAAACA____ ...((((......(((.((((......))......((((((((((....((..(((....)))..))..))))))))))......)).)))......))))................... (-22.97 = -23.05 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:03 2011