| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,332,497 – 4,332,589 |
| Length | 92 |
| Max. P | 0.883517 |
| Location | 4,332,497 – 4,332,589 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 72.42 |
| Shannon entropy | 0.43304 |
| G+C content | 0.40532 |
| Mean single sequence MFE | -22.93 |
| Consensus MFE | -9.66 |
| Energy contribution | -11.16 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.883517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4332497 92 + 23011544 --UAUCUCGAGUUGAGACUUGCAAACACAGCUCCACAUACAUACAUACAUAUGUGGUAUUAUAUAGGCUUCGGUCAGAGCUGGCACUCAAUUUA --......((((((((...(((.....((((((...((((.(((((....)))))))))......(((....))).))))))))))))))))). ( -26.80, z-score = -3.43, R) >droSim1.chr2L 4253735 84 + 22036055 --UAUCUCGAGUUGAGACUUGCAAACA--GUUCCACAUAUGU------AUCAAUAGUAUUAUAUAGGCUUCGGUCAGAGCUGGCACUCAAUUUA --......((((((((...(((...((--((((....(((((------(..........))))))(((....))).))))))))))))))))). ( -22.40, z-score = -2.64, R) >droYak2.chr2L 4364139 84 + 22324452 UAUAUUUCAAAUUGAGUCUCGCAAACA--GUUUCACAUAUU-------AGUAGUGCUAU-AUGUAGGCUUCGUUCAGAGCUGGCACUCAAUUUA ........(((((((((((.((....(--((((.((((((.-------((.....))))-)))))))))((.....)))).)).))))))))). ( -20.00, z-score = -2.42, R) >droEre2.scaffold_4929 4409352 79 + 26641161 ---UUUUCCAGCAGAGCUUAGCACUCA--GUUCCACAUAUU----------AGUGGUGCUACAUGGGCUUCGGUCGGAGCUGGCACUUCAUUUA ---....(((((.(((.......)))(--((.((((.....----------.)))).))).....(((....)))...)))))........... ( -22.50, z-score = -1.45, R) >consensus __UAUCUCGAGUUGAGACUUGCAAACA__GUUCCACAUAUU_______AU_AGUGGUAUUAUAUAGGCUUCGGUCAGAGCUGGCACUCAAUUUA ........((((((((...(((..........((((................)))).........(((((......))))).))))))))))). ( -9.66 = -11.16 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:11 2011