| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,974,157 – 4,974,258 |
| Length | 101 |
| Max. P | 0.563851 |
| Location | 4,974,157 – 4,974,258 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 83.79 |
| Shannon entropy | 0.22516 |
| G+C content | 0.32676 |
| Mean single sequence MFE | -23.87 |
| Consensus MFE | -15.46 |
| Energy contribution | -15.80 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563851 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4974157 101 - 24543557 AAUUGUUGAUAUCAAACGUUUGCUAGUUCCAUUAUUAACUAGCUCGAUUCGUAUCAUCAAUGGCUGUCAACUUACUACAAGCAAAAAGUGCUUGUAGUGUG-------- .((((.((((((.((.((...(((((((........))))))).)).)).)))))).))))...........(((((((((((.....)))))))))))..-------- ( -31.90, z-score = -5.12, R) >droSim1.chr3L 4512200 109 - 22553184 AAUUGUUGAUAUCAAAGGCUUGCUAGUUCCAUUAUUAACAAGCUCUAUUUUUACCAUCAAUGACUUGCAACAUACUGCAAGCAAAAAGUGCUUGUAUUUACUAAUUGUG ..(..(((((...(((((((((.((((......)))).)))))).....)))...)))))..)...((((.....((((((((.....))))))))........)))). ( -19.92, z-score = -0.45, R) >droSec1.super_2 4954295 109 - 7591821 AAUUGUUGAUAUCAAAGGCUUGCUAGUUCCAUUAUUAAAAAGCUCUAUUUUUAUCAUCAAUGACUUGCAACGUACUGCAAGAAAAAAGUGCUUGUAUUUACUAAUUGUG .((((.(((((....((((((..((((......))))..)))).)).....))))).))))....(((((.(((((..........))))))))))............. ( -19.80, z-score = -0.72, R) >consensus AAUUGUUGAUAUCAAAGGCUUGCUAGUUCCAUUAUUAACAAGCUCUAUUUUUAUCAUCAAUGACUUGCAACAUACUGCAAGCAAAAAGUGCUUGUAUUUACUAAUUGUG .((((.(((((..((.((...(((.(((........))).))).)).))..))))).))))..............((((((((.....))))))))............. (-15.46 = -15.80 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:59 2011