Locus 6247

Sequence ID dm3.chr3L
Location 4,961,156 – 4,961,274
Length 118
Max. P 0.671521
window8587

overview

Window 7

Location 4,961,156 – 4,961,274
Length 118
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 89.44
Shannon entropy 0.14886
G+C content 0.31501
Mean single sequence MFE -19.20
Consensus MFE -16.55
Energy contribution -16.33
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.59
Structure conservation index 0.86
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.39
SVM RNA-class probability 0.671521
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 4961156 118 + 24543557
UUUCAACUUGUGGUUUCAACU--GGGUACUGACUUAAAUCGAAUUAUUCCAUUGAAUAAAUCAACUUUAUUUAUUCCUCGCAUUUAUUUUGCGUCCGUGUAAGAUUUUCCUUAAAUUACG
.........(((((((.....--(((.........(((((((.((((((....)))))).))........((((....((((.......)))).....))))))))).))).))))))). ( -16.60, z-score =  -0.49, R)
>droSim1.chr3L 4499369 120 + 22553184
UUUCAACUUGUAGUUUCAACUAGGGGUACUGACAUAAAUCGAAUUAUUCCAUUGAAUAAAUCAACUAUAUUUAUUCCUCGCAUUUAUUUUGCGUCCGUGUAAGAUUUCCCUUAAAUUACG
.........(((((((.....(((((..((.((((.....((.((((((....)))))).))................((((.......))))...)))).))...))))).))))))). ( -22.50, z-score =  -2.33, R)
>droSec1.super_2 4941565 108 + 7591821
UUUCAACUUGUAGUUUCAACUAUGGAUACUGACAUAAAUCGAAUUAUUCCAUUGAAUAAAUCAACU------------CGCAUUUAUUUUGCGUCCGUGUAAGAUUUCCCUUAAAUUACG
.........((((((.....(((((((.............((.((((((....)))))).))....------------.(((.......))))))))))((((......)))))))))). ( -18.50, z-score =  -1.96, R)
>consensus
UUUCAACUUGUAGUUUCAACUA_GGGUACUGACAUAAAUCGAAUUAUUCCAUUGAAUAAAUCAACU_UAUUUAUUCCUCGCAUUUAUUUUGCGUCCGUGUAAGAUUUCCCUUAAAUUACG
.........((((((...........(((.(((.......((.((((((....)))))).)).................(((.......)))))).)))((((......)))))))))). (-16.55 = -16.33 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:58 2011