| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,952,161 – 4,952,221 |
| Length | 60 |
| Max. P | 0.769233 |
| Location | 4,952,161 – 4,952,221 |
|---|---|
| Length | 60 |
| Sequences | 3 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 92.22 |
| Shannon entropy | 0.10713 |
| G+C content | 0.34444 |
| Mean single sequence MFE | -13.56 |
| Consensus MFE | -11.08 |
| Energy contribution | -10.86 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.769233 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4952161 60 + 24543557 AUAUUUGUGGAGGAAAUAAAUAAACUCACUCAUGGAAAUAAAGUUCCUCGACAAAUUCCC ..((((((.((((((.........(........).........)))))).)))))).... ( -13.87, z-score = -2.55, R) >droSim1.chr3L 4490438 60 + 22553184 AUAUUUGUGGAGGAAAUAAAUGAACUGACUCAUUGAAGUAAAGUUUCUCGACAAAUUCCC ..((((((.((((((...(((((......))))).........)))))).)))))).... ( -12.90, z-score = -1.81, R) >droSec1.super_2 4932645 60 + 7591821 ACAUUUGUGGAGGAAAUAAAUAAACUGACUCAUUGAAGUAGAGUUCCUCGACAAAUUCCC ..((((((.(((((.............((((.........))))))))).)))))).... ( -13.91, z-score = -1.92, R) >consensus AUAUUUGUGGAGGAAAUAAAUAAACUGACUCAUUGAAGUAAAGUUCCUCGACAAAUUCCC ..((((((.((((((............................)))))).)))))).... (-11.08 = -10.86 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:53 2011