| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,948,547 – 4,948,639 |
| Length | 92 |
| Max. P | 0.606999 |
| Location | 4,948,547 – 4,948,639 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 77.61 |
| Shannon entropy | 0.40494 |
| G+C content | 0.51271 |
| Mean single sequence MFE | -16.09 |
| Consensus MFE | -10.30 |
| Energy contribution | -10.38 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.606999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4948547 92 + 24543557 CAAUGAGGCGCAAACGCCUUUUAUGCGUCCCAAUAAAUUCUCGCUUCCGGCAUCUAAAUUCG-CCCCCACUAUAUCCUGCCCCACCCCAACAU------- ....((((((....))))))....(((..............)))....(((..........)-))............................------- ( -12.24, z-score = -0.38, R) >droAna3.scaffold_13337 3040157 100 + 23293914 CAAUGAGGCGCAAACGCCUUUUAUGCGUUCCAAUAAAUUCUCGCUUCCGGCAUUCAAGUUCUCCUCUUUCCUGCCCCCGGUUGACCUGCUCGUCCUUGCG ....((((((....)))))).....................(((....((((...(((.......)))...))))...((.(((.....))).))..))) ( -17.50, z-score = 0.26, R) >droEre2.scaffold_4784 7661121 83 + 25762168 CAAUGAGGCGCAAACGCCUUUUAUGCGUACCAAUAAAUUCUCGCUUCCGGCGUCCAAA-----CUCGCCCCAUAUCCUGCCCCUCCAA------------ ....((((.(((.((((.......))))....................((((......-----..))))........))).))))...------------ ( -18.90, z-score = -2.82, R) >droYak2.chr3L 5530792 83 + 24197627 CAAUGAGGCGCAAACGCCUUUUAUGCGUCCCAAUAAAUUCACGCUUCCGGCAUCUAAA-----UUUGCCCCAUAUCCUGCCCCUCAAA------------ ...(((((.(((.((((.......))))....................((((......-----..))))........))).)))))..------------ ( -19.50, z-score = -3.13, R) >droSec1.super_2 4929121 87 + 7591821 CAAUGAGGCGCAAACGCCUUUCAUGCGUCCCAAUAAAUUCUCGCUUCCGGCAUCUAA------CUCCCACUAUAUCCUGCCCCGCCCCAUCAU------- ..(((.((((...((((.......))))....................((((.....------..............)))).)))).)))...------- ( -13.81, z-score = -1.11, R) >droSim1.chr3L 4486821 93 + 22553184 CAAUGAGGCGCAAACGCCUUUUAUGCGUCCCAAUAAAUUCUCGCUUCCGGCAUCUAAAUUCGACUCCCACUAUAUCCUGCCCCACGCCAUCAU------- ..((((((((...((((.......))))....................((((.........................))))...)))).))))------- ( -14.61, z-score = -0.76, R) >consensus CAAUGAGGCGCAAACGCCUUUUAUGCGUCCCAAUAAAUUCUCGCUUCCGGCAUCUAAA_____CUCCCACCAUAUCCUGCCCCACCCCAUCAU_______ ....((((((....))))))....(((..............)))....((((.........................))))................... (-10.30 = -10.38 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:52 2011