| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,917,872 – 4,917,972 |
| Length | 100 |
| Max. P | 0.892755 |
| Location | 4,917,872 – 4,917,972 |
|---|---|
| Length | 100 |
| Sequences | 7 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 68.19 |
| Shannon entropy | 0.65674 |
| G+C content | 0.51540 |
| Mean single sequence MFE | -27.77 |
| Consensus MFE | -10.08 |
| Energy contribution | -12.30 |
| Covariance contribution | 2.23 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.892755 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4917872 100 + 24543557 GGAGCCGGAUUCCUCCGGACUUCAUCACGGAUUCCGGC-GGACUUCCAUUUGCAUUAUGACCACGCAGCAGCCCCGAAAUCCGUGGAGCAGUAAAUAAGUU (((((((((....))))).)))).(((((((((.(((.-((.((.....((((...........)))).))))))).)))))))))............... ( -33.50, z-score = -2.09, R) >droSim1.chr3L 4456097 100 + 22553184 GGAGCCGGAUUCCUCCGGACUUCAUUCCGGAUUCCGGC-GGACUUCCAUUUGCAUUAUGACCACGCAGCAGCCCCGAAAUCCGUGGAGCAGUAAAUAAAUU ...((((((....((((((......)))))).))))))-((....))((((((....((......))...((((((.....)).)).)).))))))..... ( -31.80, z-score = -1.59, R) >droSec1.super_2 4898375 100 + 7591821 GGAGCCGGAUUCCUCCGGACUUCAUUCCGGAUUCCGGC-GGACUUCCAUUUGCAUUAUGACCACGCAGCAGCCCCGAAAUCCGUGGAGCAGUAAAUAAAUU ...((((((....((((((......)))))).))))))-((....))((((((....((......))...((((((.....)).)).)).))))))..... ( -31.80, z-score = -1.59, R) >droYak2.chr3L 5498061 100 + 24197627 GUAGCCGGAUUCCUACGGACUUCAUCCCGGAUUCCGGC-GGACUUCCAUUUGCAUUAUGACCACGCAGCUGCACCGAAUUCCGUGGAGCAGUAAAUAAAUU ...((((((.(((...(((.....))).))).))))))-((....))((((((....((......))(((.(((.(....).))).))).))))))..... ( -32.10, z-score = -2.48, R) >droEre2.scaffold_4784 7630051 100 + 25762168 GGAGCCGGAUUCCUCCGGACUUCAUCCCGGAAUCCGGC-GGACUUCCCUCUGCAUUAUGACCAUGUAGCUGCACCCUAUUCCGUGGAGCAGUAAAUAAAUG ((.((((((((((...(((.....))).))))))))))-((....)).............)).....(((((.(((......).)).)))))......... ( -33.80, z-score = -2.41, R) >droAna3.scaffold_13337 3006422 88 + 23293914 UAUUCCGGAC----AGGGACCUAGUCCUGAAACCAGGCCGGAUUGCCAUUUGCAUUACUGCCACGCAAAA---UAAAAUUCCGUGUAG--GUGGAUG---- ...(((((((----((....)).))))....(((.(((.(...(((.....)))...).)))((((....---.........)))).)--)))))..---- ( -22.82, z-score = -0.42, R) >droMoj3.scaffold_6680 1705420 81 + 24764193 ---------UACUCCCUAACCAUAUAUCUUUCUAUCGC--CGUCUCUCUCUCUCUCUCGCUCACGCUGCG---------UCCGUGUGUGUGUAUAUAAAUG ---------.............................--.................(((.(((((....---------...))))).))).......... ( -8.60, z-score = -2.01, R) >consensus GGAGCCGGAUUCCUCCGGACUUCAUCCCGGAUUCCGGC_GGACUUCCAUUUGCAUUAUGACCACGCAGCAGCCCCGAAAUCCGUGGAGCAGUAAAUAAAUU ...((((((.(((...(((.....))).))).))))))......................(((((................)))))............... (-10.08 = -12.30 + 2.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:48 2011