| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,915,512 – 4,915,619 |
| Length | 107 |
| Max. P | 0.803208 |
| Location | 4,915,512 – 4,915,602 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 71.76 |
| Shannon entropy | 0.52909 |
| G+C content | 0.61448 |
| Mean single sequence MFE | -18.49 |
| Consensus MFE | -10.38 |
| Energy contribution | -11.63 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.779351 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4915512 90 + 24543557 CUCCGUCCGUUGCAGUGGCCUAAACCCCGCUCCCACUCCCCUUCCCGCAUGUCCUGCCCAACGUGUCCUUGUCCAUUCGGUGGACAAGCC ....(.((((((.(((((........)))))...............(((.....))).))))).).)(((((((((...))))))))).. ( -21.60, z-score = -1.82, R) >droEre2.scaffold_4784 7627708 72 + 25762168 ------------------CCUAAGCCCCGCUCCCACUCCAACUCCCGCAUGUCCUGCCCAACGUGUCCUUGUCCAUUCGGUGGACAAGCC ------------------............................((((((........)))))).(((((((((...))))))))).. ( -15.10, z-score = -1.62, R) >droYak2.chr3L 5495563 90 + 24197627 CUCCGUCCGUUGCAGUGGCCUAGACCCCGCUCCCACUCCCAUUCCCGCAUGUCCUGCCCAGCGUGUCCUUGUCCAUUCGGUGGACAAGCC ....(.((((((.(((((........)))))...............(((.....))).))))).).)(((((((((...))))))))).. ( -21.60, z-score = -0.50, R) >droSim1.chr3L 4453764 90 + 22553184 CUCCGUCCGUUGCAGUGGCCUAAACCCCGCUCCCACUCCCCUUCCCGCAUGUCCUGCCCAACGUGUCCUUGUCCAUUCGGUGGACAAGCC ....(.((((((.(((((........)))))...............(((.....))).))))).).)(((((((((...))))))))).. ( -21.60, z-score = -1.82, R) >droWil1.scaffold_180698 1014728 70 - 11422946 ---------------CUGUCUGUAGUCCCCUCGACUUCUCGCUGCAUCCUCCAAUUUCGUUCAAUCCUAGGACCAUUCAGUGGCC----- ---------------......(.((((.....)))).)((((((.((..(((.................)))..)).))))))..----- ( -9.43, z-score = 0.41, R) >droSec1.super_2 4895962 90 + 7591821 CUCCGUCCGUUGCAGUGGCCUAAACCCCGCUCCCACUCCCUUUCCCGCAUGUCCUGCCCAACGUGUCCUUGUCCAUUCGGUGGACAAGCC ....(.((((((.(((((........)))))...............(((.....))).))))).).)(((((((((...))))))))).. ( -21.60, z-score = -1.81, R) >consensus CUCCGUCCGUUGCAGUGGCCUAAACCCCGCUCCCACUCCCAUUCCCGCAUGUCCUGCCCAACGUGUCCUUGUCCAUUCGGUGGACAAGCC ..............................................((((((........)))))).(((((((((...))))))))).. (-10.38 = -11.63 + 1.25)
| Location | 4,915,528 – 4,915,619 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 96.04 |
| Shannon entropy | 0.07226 |
| G+C content | 0.61366 |
| Mean single sequence MFE | -25.12 |
| Consensus MFE | -23.60 |
| Energy contribution | -23.52 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.803208 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4915528 91 + 24543557 GGCCUAAACCCCGCUCCCACUCCCCUUCCCGCAUGUCCUGCCCAACGUGUCCUUGUCCAUUCGGUGGACAAGCCGGUUGCUUGGCUCACUA ((((..((((....................((((((........)))))).(((((((((...)))))))))..))))....))))..... ( -24.50, z-score = -1.49, R) >droEre2.scaffold_4784 7627708 89 + 25762168 --CCUAAGCCCCGCUCCCACUCCAACUCCCGCAUGUCCUGCCCAACGUGUCCUUGUCCAUUCGGUGGACAAGCCGGUUGCUUGGCUCACUA --....((((..((..((............((((((........)))))).(((((((((...)))))))))..))..))..))))..... ( -26.40, z-score = -2.61, R) >droYak2.chr3L 5495579 91 + 24197627 GGCCUAGACCCCGCUCCCACUCCCAUUCCCGCAUGUCCUGCCCAGCGUGUCCUUGUCCAUUCGGUGGACAAGCCGGUUGCUUGGCUCACUA ((((.((...(((.................((((((........)))))).(((((((((...))))))))).)))...)).))))..... ( -25.70, z-score = -0.61, R) >droSim1.chr3L 4453780 91 + 22553184 GGCCUAAACCCCGCUCCCACUCCCCUUCCCGCAUGUCCUGCCCAACGUGUCCUUGUCCAUUCGGUGGACAAGCCGGUUGCUUGGCUCACUA ((((..((((....................((((((........)))))).(((((((((...)))))))))..))))....))))..... ( -24.50, z-score = -1.49, R) >droSec1.super_2 4895978 91 + 7591821 GGCCUAAACCCCGCUCCCACUCCCUUUCCCGCAUGUCCUGCCCAACGUGUCCUUGUCCAUUCGGUGGACAAGCCGGUUGCUUGGCUCACUA ((((..((((....................((((((........)))))).(((((((((...)))))))))..))))....))))..... ( -24.50, z-score = -1.50, R) >consensus GGCCUAAACCCCGCUCCCACUCCCAUUCCCGCAUGUCCUGCCCAACGUGUCCUUGUCCAUUCGGUGGACAAGCCGGUUGCUUGGCUCACUA ((((..((((....................((((((........)))))).(((((((((...)))))))))..))))....))))..... (-23.60 = -23.52 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:48 2011