| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,895,942 – 4,895,997 |
| Length | 55 |
| Max. P | 0.918194 |
| Location | 4,895,942 – 4,895,997 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 69.65 |
| Shannon entropy | 0.52707 |
| G+C content | 0.56539 |
| Mean single sequence MFE | -16.56 |
| Consensus MFE | -11.14 |
| Energy contribution | -13.10 |
| Covariance contribution | 1.96 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.918194 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4895942 55 - 24543557 UGGAGCACCACUUGACGA-----UGCCAAUGGCAUUGGCUUGGCGGGAGUGUCGAGUGCG ........(((((((((.-----(((((..(((....))))))))....))))))))).. ( -21.00, z-score = -1.85, R) >droSim1.chr3L 4435064 55 - 22553184 UGGAGCACCACUUGACGA-----UGCCAAUGGCAUUGGCUUGGCGGGAGUGUCGAGUGUG ........(((((((((.-----(((((..(((....))))))))....))))))))).. ( -21.20, z-score = -2.16, R) >droSec1.super_2 4882935 55 - 7591821 UGGAGCACCACUUGACGA-----UGCCAAUGGCAUUGGCUUGGCGGGAGUGUCGAGUGUG ........(((((((((.-----(((((..(((....))))))))....))))))))).. ( -21.20, z-score = -2.16, R) >droYak2.chr3L 5481320 55 - 24197627 UGGAGCACCACUUGAGGA-----UGGCAAUGGCUUUGGCUUGACGGGAGUGUCGAGUGGC .......((((((((.(.-----(.(((..(((....))))).).)...).)))))))). ( -14.80, z-score = -0.39, R) >droWil1.scaffold_180698 1000827 54 + 11422946 ------AUCUCUUGGAAACAGAUUAACAAUCACCCAGAACAAGUGGCAUCCCCCAGCACG ------.....(((....))).....................(((.(........)))). ( -4.60, z-score = 0.80, R) >consensus UGGAGCACCACUUGACGA_____UGCCAAUGGCAUUGGCUUGGCGGGAGUGUCGAGUGCG ........(((((((((......(((((..(((....))))))))....))))))))).. (-11.14 = -13.10 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:46 2011