| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,854,774 – 4,854,870 |
| Length | 96 |
| Max. P | 0.605919 |
| Location | 4,854,774 – 4,854,870 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 78.90 |
| Shannon entropy | 0.35914 |
| G+C content | 0.46470 |
| Mean single sequence MFE | -30.40 |
| Consensus MFE | -18.76 |
| Energy contribution | -21.12 |
| Covariance contribution | 2.36 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.605919 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4854774 96 + 24543557 AUGAUACGGAUGGGCAUUCGAGGGUUUUUGG----------GGUAUGGGACUGGAAGCAGGAACGGGAUCCGUUGGCCCUUAGUUAUGCUCUUCUGAUCAUUGUAA (((((.((((.((((((..(((((((..(((----------(...((...(((....)))...))...))))..)))))))....)))))).)))))))))..... ( -36.50, z-score = -3.37, R) >droEre2.scaffold_4784 7572779 105 + 25762168 AUGAUACGGAUGCGCAUUCGAGGGUUUUUGGUAAUGGAAGCGGUACGGGAACGGCAACGGCAACGG-AUCCGUUGGCCCUUAGUUAUGCUCUUCUGAUCAUUGUAA (((((.((((.(.((((..((((((((((.(((.((....)).))).))))((....)).(((((.-...)))))))))))....)))).).)))))))))..... ( -34.40, z-score = -1.59, R) >droSec1.super_2 4842124 95 + 7591821 AUGAUACGGAUGGGCAUUCGACGGUUUUUGG----------G-UAUGGGAAUGGAAGCAGCAACGGGAUCCGUUGGCCCUUAGUUAUGCUCUUCUGAUCAUUGUAA (((((.((((.((((((..(((.......((----------(-(.......((....)).((((((...))))))))))...))))))))).)))))))))..... ( -28.70, z-score = -1.13, R) >droSim1.chr3L 4393954 95 + 22553184 AUGAUACGGAUGGGCAUUCGAGGGUUUUUGG----------G-UAUGGGAAUGGAAGCAGCAACGGGAUCCGUUGGCCCUUAGUUAUGCUCUUCUGAUCAUUGUAA (((((.((((.((((((..(((((((..(((----------(-(.((....((....))....))..)))))..)))))))....)))))).)))))))))..... ( -34.10, z-score = -2.85, R) >dp4.chrXR_group8 3004822 92 + 9212921 AUGAUAAGUGUAUGUAUAUGUGGGUAUAUGGU-----------UACUGAAAUGUGGG-AUCUGUGGCAUGAUGCGGCCGUUAGUUAUGCUCUU--GAUCAUUGUAA ......((((..(((((((....)))))))..-----------))))....((..((-(((...((((((((((....))..))))))))...--)))).)..)). ( -18.30, z-score = 0.82, R) >consensus AUGAUACGGAUGGGCAUUCGAGGGUUUUUGG__________G_UAUGGGAAUGGAAGCAGCAACGGGAUCCGUUGGCCCUUAGUUAUGCUCUUCUGAUCAUUGUAA (((((.((((.((((((..((((((..........................((....)).(((((.....)))))))))))....)))))).)))))))))..... (-18.76 = -21.12 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:42 2011