| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,854,216 – 4,854,282 |
| Length | 66 |
| Max. P | 0.734198 |
| Location | 4,854,216 – 4,854,282 |
|---|---|
| Length | 66 |
| Sequences | 9 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 73.99 |
| Shannon entropy | 0.53229 |
| G+C content | 0.49499 |
| Mean single sequence MFE | -18.06 |
| Consensus MFE | -7.65 |
| Energy contribution | -8.44 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734198 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4854216 66 + 24543557 CGUCCUUAUCGCAAUCACUCACAUCGCCACUUGUGAAAUCGUGGCCGACCACCG-----AGAUGCGGAUGC (((((.((((........(((((........)))))..((((((....))).))-----))))).))))). ( -19.00, z-score = -1.31, R) >droSim1.chr3L 4393355 66 + 22553184 CGUCCUUAUCGCAAUCACUCACAUCGCCACUUGUGAAAUCGUGGCAGACCACCG-----AGAUGAGGAUGC ((((((((((........(((((........)))))..((((((....))).))-----))))))))))). ( -23.50, z-score = -3.12, R) >droSec1.super_2 4841525 66 + 7591821 CGUCCUUAUCGCAAUCACUCACAUCGCCACUUGUGAAAUCGUGGCAGACCACCG-----AGAUGAGGAUGC ((((((((((........(((((........)))))..((((((....))).))-----))))))))))). ( -23.50, z-score = -3.12, R) >droYak2.chr3L 5438790 66 + 24197627 CGUCCUUAUCGCAAUCACUCACAUCGCCACUUGUGAAAUCGUGGCAGACCACCG-----AGAUGAGGAUGC ((((((((((........(((((........)))))..((((((....))).))-----))))))))))). ( -23.50, z-score = -3.12, R) >droEre2.scaffold_4784 7572138 66 + 25762168 CGUCCUUAUCGUAAUCACUCACAUCGCCACUUGUGAAAUCGUGGCAGACCACCG-----AGAUGAGGAUGC ((((((((((........(((((........)))))..((((((....))).))-----))))))))))). ( -23.50, z-score = -3.22, R) >droAna3.scaffold_13337 2947039 66 + 23293914 CAUCUUUAUCGCAAUCAUUCACAUCGCCACUUGUGAAAACAUGCCAAACCAUAG-----AGUUAAGGAUGC (((((((...(((....((((((........))))))....)))..(((.....-----.)))))))))). ( -12.70, z-score = -1.73, R) >dp4.chrXR_group8 3004307 71 + 9212921 CAUCUUUAUCGCAAUCAUUCACAUCGCCACUUGUGAAAUCAUGGCAGGCCACCGCCGAGAGAUGAGUAUGC (((((((...((.....((((((........))))))......)).(((....))).)))))))....... ( -18.50, z-score = -1.22, R) >droWil1.scaffold_180698 960136 59 - 11422946 CAUCUUUAUCGCAAUCAUUCACAUCGCCACUUGUGAAAUCAAGGCAGGUCAGUG-----GCAUG------- .........................(((((((((.........)))....))))-----))...------- ( -9.00, z-score = 0.20, R) >droMoj3.scaffold_6680 1640961 63 + 24764193 CAGCCUUAUCAACAGUGCUGCCAAGACUGGCGAAGAAA--AAAACUAGCUUUAAGCGGGAAAUAA------ .(((((.......)).)))((((....)))).......--....((.((.....)).))......------ ( -9.30, z-score = 0.93, R) >consensus CGUCCUUAUCGCAAUCACUCACAUCGCCACUUGUGAAAUCGUGGCAGACCACCG_____AGAUGAGGAUGC ....((((((........(((((........)))))....((((....))))........))))))..... ( -7.65 = -8.44 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:41 2011