| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,764,235 – 4,764,286 |
| Length | 51 |
| Max. P | 0.655042 |
| Location | 4,764,235 – 4,764,286 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 99.22 |
| Shannon entropy | 0.01388 |
| G+C content | 0.25392 |
| Mean single sequence MFE | -2.04 |
| Consensus MFE | -2.20 |
| Energy contribution | -2.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.31 |
| Structure conservation index | 1.08 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655042 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4764235 51 - 24543557 UAUUCCUUGUUUACCUUAAUUAAUUUCGCCC-AAAGUGAUUAAAUAUUUUCA .........................((((..-...))))............. ( -2.00, z-score = -0.30, R) >droSim1.chr3L 4296803 51 - 22553184 UAUUCCUUGUUUACCUUAAUUAAUUUCGCCC-AAAGUGAUUAAAUAUUUUCA .........................((((..-...))))............. ( -2.00, z-score = -0.30, R) >droSec1.super_2 4747972 51 - 7591821 UAUUCCUUGUUUACCUUAAUUAAUUUCGCCC-AAAGUGAUUAAAUAUUUUCA .........................((((..-...))))............. ( -2.00, z-score = -0.30, R) >droYak2.chr3L 5346913 52 - 24197627 UAUUCCUUGUUUACCUUAAUUAAUUUCGCCCAAAAGUGAUUAAAUAUUUUCA .........................((((......))))............. ( -2.20, z-score = -0.34, R) >droEre2.scaffold_4784 7481208 51 - 25762168 UAUUCCUUGUUUACCUUAAUUAAUUUCGCCC-AAAGUGAUUAAAUAUUUUCA .........................((((..-...))))............. ( -2.00, z-score = -0.30, R) >consensus UAUUCCUUGUUUACCUUAAUUAAUUUCGCCC_AAAGUGAUUAAAUAUUUUCA .........................((((......))))............. ( -2.20 = -2.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:35 2011