| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,756,035 – 4,756,140 |
| Length | 105 |
| Max. P | 0.770846 |
| Location | 4,756,035 – 4,756,140 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 71.71 |
| Shannon entropy | 0.37606 |
| G+C content | 0.31365 |
| Mean single sequence MFE | -16.74 |
| Consensus MFE | -13.17 |
| Energy contribution | -13.29 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.770846 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4756035 105 - 24543557 GUUUCAGAUGGUACUUGCAUAUCAUGCUUUUAUUUAGAAUUGUACAGUAGAAUUAAAGUCAAAACCGUAUGUUACCAUAUCUUUAGGAACUGUUUGCCAUUUUAA .....((((((((...((((...))))................(((((....((((((........(((((....)))))))))))..))))).))))))))... ( -16.00, z-score = 0.26, R) >droSim1.chr3L 4288570 87 - 22553184 GUUUCAGAUGGUCCCUGCAUUUCUGGCUUUUAUUUAGAAUU-----------UUAAAGUCAAAAACAUAUGUUAUCAUAUCCUUAGGAACCAUUUAAA------- .....(((((((.((((......(((((((...........-----------..))))))).....(((((....)))))...)))).)))))))...------- ( -17.82, z-score = -2.24, R) >droSec1.super_2 4739774 83 - 7591821 GUUUCAGAUGGUCCCUGCAUUUCUGGCUUU----------------------UUAAAGUCAAAAACAUAUGUUAUCAUAUCCUUAGGAACUGUUUGCCAUUUUAA ....((((((((.((((......((((((.----------------------...)))))).....(((((....)))))...)))).))))))))......... ( -16.40, z-score = -1.55, R) >consensus GUUUCAGAUGGUCCCUGCAUUUCUGGCUUUUAUUUAGAAUU___________UUAAAGUCAAAAACAUAUGUUAUCAUAUCCUUAGGAACUGUUUGCCAUUUUAA ....((((((((.((((......(((((((........................))))))).....(((((....)))))...)))).))))))))......... (-13.17 = -13.29 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:34 2011