| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,753,996 – 4,754,057 |
| Length | 61 |
| Max. P | 0.541321 |
| Location | 4,753,996 – 4,754,057 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 66.89 |
| Shannon entropy | 0.64179 |
| G+C content | 0.43440 |
| Mean single sequence MFE | -13.23 |
| Consensus MFE | -5.35 |
| Energy contribution | -6.38 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541321 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4753996 61 - 24543557 UCAGAUGCGCGUUUAGUUUGGUCAAGAGUAGUGGAGUUCUUUUGGCCACGGUUAAUUAGUG .......(((..((((..((((((((((..........))))))))))...))))...))) ( -13.40, z-score = -1.08, R) >droAna3.scaffold_13337 2841710 53 - 23293914 UCCAAUGCGAGU---AUUUGGUGAGCAGAAGUUGAGUUCCUGCCGACACACUUAAU----- ........((((---..(((((((((.........))))..)))))...))))...----- ( -8.20, z-score = 0.36, R) >droSim1.chr3L 4286556 61 - 22553184 UUAGAUGCGCGUUUAGUUUGGUCAAGAGUAGUGGAGUACUUUUGGCCACGGUUAAUUAGUG .......(((..((((..((((((((((((......))))))))))))...))))...))) ( -16.70, z-score = -2.48, R) >droSec1.super_2 4737756 61 - 7591821 UCAGAUGCGCGUUUAGUUUGGUCAAGAGUAGUGGAGUACUUUUGGCCACGGUUAAUUAGUG .......(((..((((..((((((((((((......))))))))))))...))))...))) ( -16.70, z-score = -2.27, R) >droEre2.scaffold_4784 7468458 61 - 25762168 UCAGAUGCGCGUUUACUUUGGUCAAGAGCAACGGAGUUCUUUUGGCCACGCUUAAUGAGUG (((...(((.........((((((((((.(((...))))))))))))))))....)))... ( -16.10, z-score = -0.83, R) >droVir3.scaffold_12758 425627 60 - 972128 UUCGACUUGAGCUCAUUUAAAAGCUGUGCAGUCAA-UAUUUGCCCCACUGUCAAAUUAAUA ...(((.((((((........))))..((((....-...))))..))..)))......... ( -8.30, z-score = -0.56, R) >consensus UCAGAUGCGCGUUUAGUUUGGUCAAGAGUAGUGGAGUACUUUUGGCCACGGUUAAUUAGUG ..................((((((((((..........))))))))))............. ( -5.35 = -6.38 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:34 2011