Locus 6227

Sequence ID dm3.chr3L
Location 4,747,533 – 4,747,647
Length 114
Max. P 0.998477
window8557

overview

Window 7

Location 4,747,533 – 4,747,647
Length 114
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 73.80
Shannon entropy 0.36449
G+C content 0.35363
Mean single sequence MFE -24.11
Consensus MFE -14.02
Energy contribution -15.97
Covariance contribution 1.95
Combinations/Pair 1.07
Mean z-score -3.63
Structure conservation index 0.58
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 3.37
SVM RNA-class probability 0.998477
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 4747533 114 + 24543557
GAGAUUAACUACACUUGG-AAAAUACGAGGUGUAGAACAUUGAAUGGGGAUAC-----UACACAAAAUAGAUUUGCUACCUGAAGAACUGAAAAGGUAUAGCUAAUAAGAAAUUCGCAAU
........((((((((.(-......).)))))))).........((.((((.(-----((.......)))(((.(((((((............))))..))).))).....)))).)).. ( -19.80, z-score =  -1.97, R)
>droSec1.super_2 4731273 120 + 7591821
AAGAUUAACUACACUUGGGAAAAUACGAAGUGUAGAACAUUGAAUGGGGAUACCGAACUACAGGAUUAAGAUUUGCUACCUGAAGAACUGAAAAGUUCUGGCUAAUAAGAAAUUGGCUAU
........((((((((.(.......).)))))))).........(((.....))).....((((..............)))).((((((....))))))(((((((.....))))))).. ( -30.84, z-score =  -4.54, R)
>droSim1.chr3L 4280122 86 + 22553184
GAGAUUAACUACACUUGGGAAAA-ACGAGGUGUAGAACAUUG---------------------------------CUACCUGAAGAACUGAAAAGUUCUGGAAAAUAAGAAAUUGGCUAU
........((((((((.(.....-.).))))))))......(---------------------------------((.((...((((((....)))))))).....((....)))))... ( -21.70, z-score =  -4.39, R)
>consensus
GAGAUUAACUACACUUGGGAAAAUACGAGGUGUAGAACAUUGAAUGGGGAUAC_____UACA__A___AGAUUUGCUACCUGAAGAACUGAAAAGUUCUGGCUAAUAAGAAAUUGGCUAU
........((((((((.(.......).))))))))................................................((((((....))))))..................... (-14.02 = -15.97 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:33 2011