| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,675,992 – 4,676,091 |
| Length | 99 |
| Max. P | 0.722111 |
| Location | 4,675,992 – 4,676,091 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 77.86 |
| Shannon entropy | 0.28755 |
| G+C content | 0.31913 |
| Mean single sequence MFE | -18.61 |
| Consensus MFE | -9.61 |
| Energy contribution | -11.07 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.722111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4675992 99 + 24543557 UAUUUCCUAAAGCUGAACUAAGCUGAUGGUUUUUCAGACUCCUAUAUUUUGGAAGUUUACUUUUAAGAUUAAACUAUCUAAGAUCAGCUUAGCCACACU .........(((((((.((.....((((((((.............((((((((((....)))))))))).))))))))..)).)))))))......... ( -21.54, z-score = -1.99, R) >droSec1.super_2 4658256 82 + 7591821 UACUUCCUUCAGCUGAACUAAGCUGAUGAAUUUUUGAA-----------------UUUACUUUAAAGAUUAAACUAUUUCAGAGCAGUUUAGCCACACU ...........((((((((...((((..((((((((((-----------------.....))))))))))........))))...))))))))...... ( -17.50, z-score = -2.73, R) >droSim1.chr3L 4205783 82 + 22553184 UACUUCCUUAAGCUGAACUAAGCUGAUGAAUUUUUGAA-----------------UUUACUUUUAAGAUUAAACUACUUAAGAGCAGCUUAGCCACACU .................((((((((.((((((....))-----------------))))((((((((.........))))))))))))))))....... ( -16.80, z-score = -2.76, R) >consensus UACUUCCUUAAGCUGAACUAAGCUGAUGAAUUUUUGAA_________________UUUACUUUUAAGAUUAAACUAUUUAAGAGCAGCUUAGCCACACU .................((((((((..........(((((((((.....))))))))).((((((((.........))))))))))))))))....... ( -9.61 = -11.07 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:26 2011