| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,662,751 – 4,662,842 |
| Length | 91 |
| Max. P | 0.627726 |
| Location | 4,662,751 – 4,662,842 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 69.62 |
| Shannon entropy | 0.53454 |
| G+C content | 0.35787 |
| Mean single sequence MFE | -19.43 |
| Consensus MFE | -6.61 |
| Energy contribution | -5.99 |
| Covariance contribution | -0.62 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627726 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4662751 91 + 24543557 ---------AUAAACGUUCUU---GGACAGGCCAAGA-CAAGGUUUAUU-------UGUUUGUUUGCUUUAAAUGCAGAUAAA-UGCCUCUGACAUCCAUAUGAACAACCAC------ ---------......((((.(---(((((((((....-...))).....-------.((((((((((.......)))))))))-)....)))...))))...))))......------ ( -21.50, z-score = -1.99, R) >droSim1.chr3L 4192618 90 + 22553184 ---------AUAAACGUUCUU---GGACAGGCCAAGA-CAAGGUUUAUU-------UGUUUGUUUGCUU-AAAUGCAGAUAAA-UGCCUCUGACAUCCAUAUGAACAUCCAC------ ---------......((((.(---(((((((((....-...))).....-------.((((((((((..-....)))))))))-)....)))...))))...))))......------ ( -22.00, z-score = -2.04, R) >droSec1.super_2 4645147 90 + 7591821 ---------AUAAACGUUCUU---GGACAGGCCAAGA-CAAGGUUUAUU-------UGUUUGUUUGCUU-AAAUGCAGAUAAA-UGCCUCUGACAUCCAUAUGAACAUCCUC------ ---------......((((.(---(((((((((....-...))).....-------.((((((((((..-....)))))))))-)....)))...))))...))))......------ ( -22.00, z-score = -2.05, R) >droYak2.chr3L 5241324 93 + 24197627 ---------AUAAACGUUCUUCUUGGACAGGCCAAGA-CAAGGUUUAUU-------UGUUUGUUUGCUU-AAAUGCAGAUAAA-UGCCUCUGACAUCCAUAUGAACAUCCAC------ ---------......((((.((((((.....))))))-((((((.....-------.((((((((((..-....)))))))))-))))).))..........))))......------ ( -23.70, z-score = -2.53, R) >droEre2.scaffold_4784 7375284 90 + 25762168 ---------AUAAACGUUCUU---GGACAGGCCAAGA-CAAGGUUUAUU-------UGUUUGUUUGCUU-AAAUGCAGAUAAA-UGCCUCUGACAUCCAUAUAAACAUCCAC------ ---------((((((.(((((---((.....))))))-..).)))))).-------.((((((((((..-....)))))))))-)...........................------ ( -19.70, z-score = -1.58, R) >droAna3.scaffold_13337 2750442 104 + 23293914 ---------AUAAACGUUUUC---GGACAGGCCGAGAGCAAGGCAAGUCGAGGCAAGGUUUGUUUGCUU-AAAUACAGAUAAA-UGCUACUGACAUUCAUAUAAACAUCAGAAUCAGC ---------......((((((---((.....)))))))).......((((.((((..((((((.(....-..).))))))...-))))..))))........................ ( -22.10, z-score = -1.12, R) >dp4.chrXR_group8 2780362 82 + 9212921 ---------AUAAACGUUUUC---GGCCAGGCCAAGA----------------CGAGGUUUAUUUGUUU-AAAUACAGAUAAA-UGCUACGGACAUUCAUAGAAACAUCAAC------ ---------.....((((((.---(((...)))))))----------------))..((((((((((..-....)))))))))-)...........................------ ( -16.10, z-score = -2.10, R) >droPer1.super_24 1282056 82 - 1556852 ---------AUAAACGUUUUC---GGCCAGGCCAAGA----------------CGAGGUUUAUUUGUUU-AAAUACAGAUAAA-UGCUACGGACAUUCAUAGAAACAUCAAC------ ---------.....((((((.---(((...)))))))----------------))..((((((((((..-....)))))))))-)...........................------ ( -16.10, z-score = -2.10, R) >droWil1.scaffold_180698 767881 98 - 11422946 GUGUGUGUGUGAAACAUUUUU-------GGGCUUAAAAUACAACAAAAU------GUGUUGUUUUGUUU-AAAUAUAGAUAAAAUACCAGUGACAUUUAUACGAACACACAC------ (((((((((((((......((-------((......((((((......)------)))))(((((((((-(....)))))))))).)))).....)))))))..))))))..------ ( -24.20, z-score = -1.95, R) >droVir3.scaffold_12758 301658 74 + 972128 ---------AUAAACGUU--------CGAGGCCAGGA-------------------CGUUUGUUUGUUU-AAAUAUAGAUAAA-UGCCAUUGACAUUUAAACAAACACAUAC------ ---------..(((((((--------(.......)))-------------------)))))((((((((-((((...(((...-....)))...))))))))))))......------ ( -18.60, z-score = -3.77, R) >droMoj3.scaffold_6680 1407198 74 + 24764193 ---------AUAAACGUU--------CGAGGCCAGGA-------------------CGUUUGUUUGUUU-AAAUAUAGAUAAA-UGCCAGUGACAUUUAUACAAACACAUAC------ ---------..(((((((--------(.......)))-------------------)))))((((((..-........(((((-((.......)))))))))))))......------ ( -14.80, z-score = -1.91, R) >droGri2.scaffold_15110 23449879 70 - 24565398 ---------AUAAACUUU--------GGAGGCCAGGA-------------------CGUUUGUUUGUUU-AAAUAUAGAUAAA-UGCCACUGACAUUUAUACACAUAC---------- ---------(((((..(.--------.(.(((.....-------------------.((((((((((..-....)))))))))-)))).)..)..)))))........---------- ( -12.40, z-score = -1.38, R) >consensus _________AUAAACGUUCUU___GGACAGGCCAAGA_CAAGG___AUU_______UGUUUGUUUGCUU_AAAUACAGAUAAA_UGCCACUGACAUUCAUAUAAACAUCCAC______ .............................(((..........................(((((((((.......)))))))))..))).............................. ( -6.61 = -5.99 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:25 2011