| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,319,071 – 4,319,122 |
| Length | 51 |
| Max. P | 0.904205 |
| Location | 4,319,071 – 4,319,122 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 85.62 |
| Shannon entropy | 0.23621 |
| G+C content | 0.32353 |
| Mean single sequence MFE | -10.88 |
| Consensus MFE | -8.40 |
| Energy contribution | -7.90 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.904205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4319071 51 + 23011544 UUUGAAUCCCCAUUUUCUGUGUGAAUUGGGGGCUACUUUCAAUUCAUCUUA .(((((((((((..(((.....))).)))))).....)))))......... ( -12.10, z-score = -1.72, R) >droSim1.chr2L 4241246 51 + 22036055 UUUGAAUCCCUUAUUUCUGUGUGAAUUAGGGGCUUCUUUUAAUUCAUCUUA ...(((.((((((.(((.....))).)))))).)))............... ( -12.50, z-score = -3.19, R) >droSec1.super_5 2416669 51 + 5866729 UUUGAAUCCCUUAUUUCUGUGUGAAUUAGGGGCUUCUUUUAAUUCACCUUA ...(((.((((((.(((.....))).)))))).)))............... ( -12.50, z-score = -2.92, R) >droEre2.scaffold_4929 4395837 51 + 26641161 UUUUAAUUCCUUGUUUCUGCGUGAAUUAGAGGCUUCUUUUAAUUAAUUUGA (((((((((..(((....))).))))))))).................... ( -6.40, z-score = -0.67, R) >consensus UUUGAAUCCCUUAUUUCUGUGUGAAUUAGGGGCUUCUUUUAAUUCAUCUUA ....................((((((((((((...)))))))))))).... ( -8.40 = -7.90 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:07 2011