| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,655,653 – 4,655,772 |
| Length | 119 |
| Max. P | 0.515672 |
| Location | 4,655,653 – 4,655,772 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.06 |
| Shannon entropy | 0.42950 |
| G+C content | 0.50019 |
| Mean single sequence MFE | -37.68 |
| Consensus MFE | -18.95 |
| Energy contribution | -20.12 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515672 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4655653 119 - 24543557 CAUUUCUUUUUAUGGCUGCCUGCAUUGGUGGCACAUGUAAUGGGAAUCGGCG-GGCAAAAGCUCUAUUUCUGCCACUCGUGGACCAGCAAAAUGCUGCUCCUGGCAGCUGGAAAAAGGCU ....(((((((.((((((((...((.((((((.(((...)))((((.....(-(((....))))...)))))))))).))(((.((((.....)))).))).)))))))).))))))).. ( -42.80, z-score = -1.57, R) >droSim1.chr3L 4185497 117 - 22553184 CAUUUCUUUUUAUGGCUGCCUGCAUUGGUGGCACAUGUAAUGGGAAUCGGCG-GGCAAAAGCUCUAUUUCUGCCACUCCUGGA-CAGCAAAAUGCUGCUCCUGGCAGCGGGAAAAUGCU- .((((((...((((((..((......))..)).))))....)))))).((((-(((....))))..(((((((....((.(((-((((.....)))).))).))..)))))))...)))- ( -41.30, z-score = -1.53, R) >droSec1.super_2 4638020 117 - 7591821 CAUUUCUUUUUAUGGCUGCCUGCAUUGGUGGCACAUGUAAUGGGAAUCGGCG-GGCAAAAGCUCUAUUUCUGCCACUCCUGGA-CAGCAAAAUGCUGCUCCUGGCAGCGGGAAAAUGCA- .((((((...((((((..((......))..)).))))....))))))..(((-(((....))))..(((((((....((.(((-((((.....)))).))).))..)))))))...)).- ( -41.10, z-score = -1.37, R) >droEre2.scaffold_4784 7367847 91 - 25762168 CAUUUCCUUUUAUGGCUGCCUGCAUUGGUGGCACAUGUAAUGGGAACUGGCG-GGCAAAAGCUCUAUUUCUGCCACUCCUGGA-CAGCAAAAU--------------------------- ((.(((((..((((((..((......))..)).))))....))))).))..(-(((....))))..(((((((((....))).-))).)))..--------------------------- ( -28.00, z-score = -0.99, R) >droAna3.scaffold_13337 2743395 107 - 23293914 CAUUGCUUUUUACGGCUGCCUGCAUUGGUGGCAGCUGUAAUGGCAAUCGAUGUUGAAAAAACUCUAUUCCUGCCCCCCUGGUUGUUGC-UCUUACUGCCACGGAUGCC------------ .((((((..(((((((((((.((....))))))))))))).)))))).((.(((.....))))).......((..((.((((.((...-....)).)))).))..)).------------ ( -35.20, z-score = -2.72, R) >consensus CAUUUCUUUUUAUGGCUGCCUGCAUUGGUGGCACAUGUAAUGGGAAUCGGCG_GGCAAAAGCUCUAUUUCUGCCACUCCUGGA_CAGCAAAAUGCUGCUCCUGGCAGC_GGAAAA_G___ .((((((...((((((..((......))..)).))))....)))))).((((.(((....))).......))))...................(((((.....)))))............ (-18.95 = -20.12 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:24 2011