| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,633,411 – 4,633,519 |
| Length | 108 |
| Max. P | 0.794162 |
| Location | 4,633,411 – 4,633,519 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 83.72 |
| Shannon entropy | 0.29225 |
| G+C content | 0.34563 |
| Mean single sequence MFE | -18.80 |
| Consensus MFE | -15.46 |
| Energy contribution | -16.26 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.794162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4633411 108 - 24543557 CUCCGCAGCUGUGCGUUUUUCGCAAUUUUCCGCAAAUUUAUUUUCUGGCUGCUGCCAAAUAGUUGCACAAAAAUAAACUCUUUUUUGCGUUCCUUAU-UAUCAAUGUAU ....(((((((((((.....)))......................((((....)))).)))))))).((((((........))))))..........-........... ( -22.10, z-score = -1.95, R) >droSim1.chr3L 4164971 108 - 22553184 CUCCGCAGCUGUGCGUUUUUCGCAAUUUUCCACAAAUUUAUUUUAUGGCUGCUGCCAAAUAGUUGCACAAAAAUAAACUCUUUUUUAAGGUCCUUAU-UAUAUAGGUAU ..(((((((((((((.....)))......................((((....)))).))))))))..(((((........)))))..)).(((...-.....)))... ( -22.40, z-score = -1.61, R) >droSec1.super_2 4615571 108 - 7591821 CUCCGCAGCUGUGCGUUUUUCGCAAUUUUCCACAAAUUUAUUUUAUGGCUGCUGCCAAAUAGUUGCACAAAAAUAAACUCUUUUUUAAGUUCCUUAU-UAUAUAGGUAU ..(((((((((((((.....)))......................((((....)))).)))))))).....(((((...(((....)))....))))-).....))... ( -21.70, z-score = -1.80, R) >droYak2.chr3L 5208650 101 - 24197627 CUCCGCAGCUGUGCAUUUUUCGCAAUUUGCCACAAUUUUAUUUUAUGGACACUGCCAAAUAGUUGCACAAAACUAAACUCAUUUUUAUAUUUCUUAAACUU-------- ....(((((((((((..((....))..)))...............(((......))).))))))))...................................-------- ( -14.00, z-score = -0.72, R) >droEre2.scaffold_4784 7344238 107 - 25762168 CUCCGCAGCUGUGCAUUUUUCGCCAUUUUCCGCAAAUUUAUUUUAUGGAUACUGCCAAAUAGUUGCACCUAA--AAAACCAUCCUUACAUUCCUUAUACAUAUAACUAU ....((((((((((.......)).....((((.(((.....))).)))).........))))))))......--................................... ( -13.80, z-score = -1.18, R) >consensus CUCCGCAGCUGUGCGUUUUUCGCAAUUUUCCACAAAUUUAUUUUAUGGCUGCUGCCAAAUAGUUGCACAAAAAUAAACUCUUUUUUAAGUUCCUUAU_UAUAUAGGUAU ....(((((((((((.....)))......................((((....)))).))))))))........................................... (-15.46 = -16.26 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:24 2011