| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,626,132 – 4,626,251 |
| Length | 119 |
| Max. P | 0.968420 |
| Location | 4,626,132 – 4,626,251 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.18 |
| Shannon entropy | 0.21767 |
| G+C content | 0.47546 |
| Mean single sequence MFE | -37.26 |
| Consensus MFE | -31.28 |
| Energy contribution | -30.16 |
| Covariance contribution | -1.12 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.968420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4626132 119 + 24543557 AGGAAAAUCGUGGGAAACUGCGGUGGAUUUUAGAGCGAGAUGGGUGAUGCUCUGAAAGAGAGAGAGGGAAUGCACCCUCUGGCGAUGGGCCAAGUUCGAUAUUAGCAUGGA-UUCCUAUC (((((.((((..(....)..))))...((((((((((..........))))))))))..(((((((((......))))))(((.....)))...)))..............-)))))... ( -38.60, z-score = -2.07, R) >droSim1.chr3L 4157707 120 + 22553184 AGGAAAAUCGUGGGAAACUGCGGUGGAUUUUAGAGAGAGAUAGGAUACGCUCUGAAAGAGAGAGAGGGAAUGCACCUUCUGGCGAUGGGCAAAGUUCGAUAUUAGCAUGGAAUUCCUAUC ......((((..(....)..))))...((((((((...(........).))))))))..(..((((((......))))))..)((((((...(((((.((......)).))))))))))) ( -33.10, z-score = -1.75, R) >droSec1.super_2 4608367 120 + 7591821 AGGAAAAUCGUGGGAAACUGCGGUGGAUUUUAGAGAGAGAUAGGAUACGCUCUGAAAGAGAGAGAGGGAAUGCACCUUCUGGCGAUGGGCAAAGUUCGAUAUUAGCGUGGAAUUCCUAUC ......((((..(....)..))))..............(((((((..(((.((((.(..(((((((((......)))))).((.....))....)))..).)))).)))....))))))) ( -34.50, z-score = -2.01, R) >droYak2.chr3L 5201219 115 + 24197627 AGGAAAAUCGUGGGAAACUGCGGUGGAUUUUAGAGCGAGAUAGUGUAUGCUCUGA----GAGAGAGGGAAUACACUCUCUGGCGAUGGGGAAGGUUCGAUUUCAGCACUGC-UUCCUAUC ......((((..(....)..))))..........((.(((.(((((((.((((..----.....)))).))))))).))).))((((((((.(((.(.......).)))..-)))))))) ( -39.90, z-score = -2.60, R) >droEre2.scaffold_4784 7336163 115 + 25762168 AGGGAAAUCGUGGGAAACUGCGGUGGAUUUUAGAGCGAGAUGGUUGAUGCUCUGA----GAGAGAGAGAAUGCACUCUCUGGCGAUGGGCAAAAUUCGAUUUCACCACGAU-UUCUUAUC .(((((((((..(....)..)((((((((((((((((..(....)..))))))))----)).((((((......)))))).((.....))..........))))))..)))-)))))... ( -40.20, z-score = -3.12, R) >consensus AGGAAAAUCGUGGGAAACUGCGGUGGAUUUUAGAGCGAGAUAGGAUAUGCUCUGAAAGAGAGAGAGGGAAUGCACCCUCUGGCGAUGGGCAAAGUUCGAUAUUAGCAUGGA_UUCCUAUC (((((.((((..(....)..))))(((((((((((((..........))))))))....(..((((((......))))))..).........)))))...............)))))... (-31.28 = -30.16 + -1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:19 2011