| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,619,878 – 4,619,941 |
| Length | 63 |
| Max. P | 0.898670 |
| Location | 4,619,878 – 4,619,941 |
|---|---|
| Length | 63 |
| Sequences | 6 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 73.00 |
| Shannon entropy | 0.47365 |
| G+C content | 0.40575 |
| Mean single sequence MFE | -14.20 |
| Consensus MFE | -8.58 |
| Energy contribution | -8.17 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.898670 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4619878 63 - 24543557 AAUAUUUUCUCUGUGGACACUGCAAACAUUUGCAU-UGUUGUGUCCUGUUGAGCUCCUCUAUAU---------- ........(((...(((((((((((....))))).-....))))))....)))...........---------- ( -14.60, z-score = -2.54, R) >droSim1.chr3L 4151432 63 - 22553184 AAUAUUUUCCCUGUGGACACUGCAAACAUUUGCAU-UGUUGUGUCCUGUUGAGCUCCUCCAUAU---------- ..............(((((((((((....))))).-....))))))(((.(((...))).))).---------- ( -12.40, z-score = -1.37, R) >droSec1.super_2 4601481 63 - 7591821 AAUAUUUUCCAUGUGGACACUGCAAACAUUUGCAU-UGUUGUGUCCUGUUGAGCUCCUCCAUAU---------- .........((...(((((((((((....))))).-....))))))...)).............---------- ( -13.10, z-score = -1.26, R) >droYak2.chr3L 5194963 63 - 24197627 AAUAUUUUCUCUGUGGACACUGCAAACAUUUGCAU-UGCUGUGUCCUGUUGAGCACGUCCAUCU---------- ............((((((..(((((....))))).-....(((..(....)..)))))))))..---------- ( -16.40, z-score = -2.03, R) >droEre2.scaffold_4784 7329832 63 - 25762168 AAUAUUUUCUCUGUGGACACUGCAAACAUUUGCAU-UGUUGUGUCCUGUUGAGCUCCUCCAUCU---------- ........(((...(((((((((((....))))).-....))))))....)))...........---------- ( -14.60, z-score = -2.30, R) >droWil1.scaffold_180772 7810213 72 - 8906247 UAUAUGAGUUUAACGUGCGC--CAAGUGCUAGCUUACUCUCUUUAUCCUUAUGCUCUUACAGUCUGAGAGAGAA ....((((((....(..(..--...)..).))))))(((((((...(..((......))..)...))))))).. ( -14.10, z-score = 0.11, R) >consensus AAUAUUUUCUCUGUGGACACUGCAAACAUUUGCAU_UGUUGUGUCCUGUUGAGCUCCUCCAUAU__________ .......((.....(((((((((((....)))))......))))))....))...................... ( -8.58 = -8.17 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:18 2011