| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,618,850 – 4,618,934 |
| Length | 84 |
| Max. P | 0.538731 |
| Location | 4,618,850 – 4,618,934 |
|---|---|
| Length | 84 |
| Sequences | 5 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 82.33 |
| Shannon entropy | 0.29542 |
| G+C content | 0.53166 |
| Mean single sequence MFE | -22.90 |
| Consensus MFE | -18.72 |
| Energy contribution | -18.60 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.538731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4618850 84 + 24543557 GCGAUUGGAAUGCCAGAAAUGUUUGGCUUCACCUGGUCAGCAGAGCAGCCAAAUUGCUCACCUCCGUCGCUCCGUUUGUGCGCC (((((.(((.(((((....))..(((((......))))))))((((((.....))))))...))))))))..(((....))).. ( -24.80, z-score = -0.32, R) >droEre2.scaffold_4784 7328884 76 + 25762168 GCGAUUGGAAUGCCAGAAAUGUUUGGCUUCACCUGGUCAGCUGUGUAGCCAAAUUGUUCGGCUCCGUUUGUGCGCC-------- (((..((((..(((.(((..((((((((.(((..((....))))).))))))))..))))))))))....)))...-------- ( -26.50, z-score = -2.05, R) >droYak2.chr3L 5193957 76 + 24197627 GCGAUUGGAAUGCCAGAAAUGUUUGGCUUCAACUGGUCAGCAGAGCAGCCAAAUUGCUCACCUCCGUUUGUGCGCC-------- (((((..(...((((((....)))))).....)..))).)).((((((.....)))))).....(((....)))..-------- ( -21.60, z-score = -0.17, R) >droSec1.super_2 4600589 65 + 7591821 GCGAUUGGAAUGCCAGAAAUGUUUGGCUUCACCUGGUCAGCAGAGCAGCCAAAUUGCUCACCUCC------------------- (((((..(...((((((....)))))).....)..))).)).((((((.....))))))......------------------- ( -20.80, z-score = -1.48, R) >droSim1.chr3L 4150446 65 + 22553184 GCGAUUGGAAUGCCAGAAAUGUUUGGCUUCACCUGGUCAGCAGAGCAGCCAAAUUGCUCACCUCC------------------- (((((..(...((((((....)))))).....)..))).)).((((((.....))))))......------------------- ( -20.80, z-score = -1.48, R) >consensus GCGAUUGGAAUGCCAGAAAUGUUUGGCUUCACCUGGUCAGCAGAGCAGCCAAAUUGCUCACCUCCGU___U_CG__________ (((((..(...((((((....)))))).....)..))).)).((((((.....))))))......................... (-18.72 = -18.60 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:17 2011