| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,618,357 – 4,618,437 |
| Length | 80 |
| Max. P | 0.575445 |
| Location | 4,618,357 – 4,618,437 |
|---|---|
| Length | 80 |
| Sequences | 6 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 78.34 |
| Shannon entropy | 0.42120 |
| G+C content | 0.43681 |
| Mean single sequence MFE | -18.42 |
| Consensus MFE | -11.29 |
| Energy contribution | -11.60 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.575445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4618357 80 - 24543557 UCAAUUAAUCCACUCGGUUAGUGGAGCACUUUUAAUGAGUGCCACUCACGUAGAAGAAACUGCAGCUGCAACUGAAACUC .............((((((.(..(.((((((.....)))))).......((((......))))..)..)))))))..... ( -19.40, z-score = -1.28, R) >droSim1.chr3L 4149904 80 - 22553184 UCAAUUAAUCCACUCGGUCAGUGGGGCACUUUUAAUGAGUGCCACUCACGUAGAAGAAACUGCAGCUGCAACUGAAACUC .............(((((((((..(((((((.....)))))))......((((......)))).))))..)))))..... ( -22.40, z-score = -1.93, R) >droSec1.super_2 4600061 63 - 7591821 -----------------UCAGUGGGGCACUUUUAAUGAGUGCCACUCACGUAGAAGAAACUGCAGCUGCAACUGAAACUC -----------------(((((..(((((((.....)))))))......((((......)))).......)))))..... ( -19.60, z-score = -2.04, R) >droYak2.chr3L 5193429 80 - 24197627 UCAAUUAAUCCACUCGGUCAGUGGAGCACUUUUAAUGAGUGCCACUCACGUAGAAGAAACUGCAGCUGCAACUGAAACUC .............((((((((((..((((((.....))))))..)....((((......)))).))))..)))))..... ( -19.30, z-score = -1.10, R) >droEre2.scaffold_4784 7328474 80 - 25762168 UGAAUUAAUCCACUCGGUCAGUGGAGCACUUUUAAUGAGUGCCACUCACGUAUAAGAAACUGCAGCUGCAACUGAAACUC (((.....((((((.....))))))((((((.....))))))...)))............(((....))).......... ( -16.90, z-score = -0.50, R) >droAna3.scaffold_13337 2704016 70 - 23293914 ----UUAAUUAAUCUACUUAGUUGGACACUUUUCAAGAGCUCCAGCU------UAGAAACUGCACUUGCAUCUAAAGUUC ----...........(((((((((((..(((.....))).)))))))------((((...(((....))))))))))).. ( -12.90, z-score = -1.03, R) >consensus UCAAUUAAUCCACUCGGUCAGUGGAGCACUUUUAAUGAGUGCCACUCACGUAGAAGAAACUGCAGCUGCAACUGAAACUC .................(((((...((((((.....))))))..................(((....))))))))..... (-11.29 = -11.60 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:17 2011