| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,616,387 – 4,616,491 |
| Length | 104 |
| Max. P | 0.915974 |
| Location | 4,616,387 – 4,616,491 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 91.85 |
| Shannon entropy | 0.14082 |
| G+C content | 0.45188 |
| Mean single sequence MFE | -32.06 |
| Consensus MFE | -26.28 |
| Energy contribution | -26.76 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.915974 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4616387 104 - 24543557 UGUGGAUAGGGGGGCAGUAAGUGCUGCUUUUCCAGACAGCUACAAAUUUUCAUAGCAUAUUUCAAGCUGACUUCAGUUGGCAUGAGAGCGCCACACAAAACGUU (((((...(..(((((((....)))))))..)......((((..........))))...(((((.((..((....))..)).)))))...)))))......... ( -31.50, z-score = -1.84, R) >droSim1.chr3L 4147898 103 - 22553184 UGGGGAU-GGGGGGUAGUAAGUGCUGCUUUUCCAGACAGCUACAAAUUUUCAUAGCAUAUUUCAUGCUGACUUCAGUUGGCAUGAGAGCGCCACACAAAACGAU ((((..(-((..((((((....))))).)..)))..).((((..........))))...((((((((..((....))..))))))))...)))........... ( -32.60, z-score = -2.34, R) >droSec1.super_2 4598059 103 - 7591821 UGUGGAU-GGGGGGUAGUAAGUGCUGCUUUUCCAGACAGCUACAAAUUUUCAUAGCAUAUUUCAUGCUGACUUCAGUUGGCAUGAGAGCGCCACACAAAACGAU (((((.(-((..((((((....))))).)..)))....((((..........))))...((((((((..((....))..))))))))...)))))......... ( -34.50, z-score = -2.78, R) >droYak2.chr3L 5191410 99 - 24197627 -GGGGAU----GGGGGGUUAGUGCUCCUUUUCCAAACAACUACAAAUUUUCAUAGCAUAUUUCAUGCUGACUUCAGUUGGCAUGAGAGCGCCACACAAAACGGU -(((((.----.((((((....))))))..))).....................((...((((((((..((....))..)))))))))).))............ ( -31.70, z-score = -2.91, R) >droEre2.scaffold_4784 7326430 100 - 25762168 UGUGGAU----GGGGAGUAAGUGCUCCUUUUCCAGACAACUACAAAUUUUCAUAGCAUAUUUCAUGCUGACUUCAGCUGGCAUGAGAGCGCCACACAAAGCGUU ..((((.----.((((((....))))))..)))).........................(((((((((..(....)..)))))))))((((........)))). ( -30.00, z-score = -1.76, R) >consensus UGUGGAU_GGGGGGGAGUAAGUGCUGCUUUUCCAGACAGCUACAAAUUUUCAUAGCAUAUUUCAUGCUGACUUCAGUUGGCAUGAGAGCGCCACACAAAACGAU .((((...(..(((((((....)))))))..)......................((...((((((((((((....)))))))))))))).)))).......... (-26.28 = -26.76 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:16 2011