| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,615,647 – 4,615,768 |
| Length | 121 |
| Max. P | 0.978595 |
| Location | 4,615,647 – 4,615,768 |
|---|---|
| Length | 121 |
| Sequences | 5 |
| Columns | 132 |
| Reading direction | reverse |
| Mean pairwise identity | 91.31 |
| Shannon entropy | 0.14658 |
| G+C content | 0.52703 |
| Mean single sequence MFE | -46.51 |
| Consensus MFE | -34.78 |
| Energy contribution | -34.66 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.03 |
| Mean z-score | -3.12 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.978595 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4615647 121 - 24543557 ---CCCCCAUCUCGGCGAUUUUUCCCC-----CCA---UUUUCCUGCUGCAUUGCGCCGGAGCUUUUGUCUCAAGUGCAUUGCAGUUGGAAUUGUGUCUAGAGUGGGCUGCACUUGUCGCAAAAAAGCUGCA ---..((((.(((((.((....)))).-----.((---(.((((.((((((.(((((..((((....).)))..))))).)))))).))))..)))....)))))))..((((((.........))).))). ( -42.90, z-score = -2.59, R) >droSim1.chr3L 4147140 129 - 22553184 ---CCCCCAUCUUGGCGAUUUUCCCCCCGUCCCCACACUUUUCCUGCUGCAUUGCGCCGGAGCUUUUGUCUCAAGUGCAUUGCAGUUGGAAUUGUGUCUAGAGUGGGCUGCACUUGUCGCAAAAAAGCAGCA ---...(((.(((((((..........))))...((((..((((.((((((.(((((..((((....).)))..))))).)))))).))))..))))...))))))(((((...............))))). ( -46.66, z-score = -3.11, R) >droSec1.super_2 4597303 129 - 7591821 ---CCCCCAUCUCGGCGAUUUUCCCCCUGCCCCCACACUUUUCCUGCUGCAUUGCGCCGGAGCUUUUGUCUCAAGUGCAUUGCAGUUGGAAUUGUGUCUAGAGUGGGCUGCACUUGUCGCAAAAAAGCUGCA ---..((((.(((((((..........))))...((((..((((.((((((.(((((..((((....).)))..))))).)))))).))))..))))...)))))))..((((((.........))).))). ( -48.90, z-score = -3.66, R) >droYak2.chr3L 5190631 123 - 24197627 CCCCCGCUAUCUCAGGGAUUUUUCCC------CCA---UUUUCCUGCUGCAUUGCGCCGGAGCUUUUGUCUCAAGUGCAUUGCAGUUGGAAUUGUGUCUAGAGUGGGCUGCACUUGUCGCAAAAAAGCGGCA ..((((((......((((....))))------.((---(.((((.((((((.(((((..((((....).)))..))))).)))))).))))..))).....)))))).......((((((......)))))) ( -50.40, z-score = -3.79, R) >droEre2.scaffold_4784 7325658 120 - 25762168 ---ACCCCAUCUCGGGGAUUUUCCCC------CCA---UUUUCCUGCUGCAUUGCGCCGCAGCUUUUGUCUCAAGUGCAUUGCAGUUGGAAUUGUGUCUAGAGUGGGCUGCACUUGUCGCAAAAAAGCUGCA ---..((((.(((((((.....))))------.((---(.((((.((((((.(((((...(((....).))...))))).)))))).))))..)))....)))))))..((((((.........))).))). ( -43.70, z-score = -2.46, R) >consensus ___CCCCCAUCUCGGCGAUUUUCCCCC_____CCA___UUUUCCUGCUGCAUUGCGCCGGAGCUUUUGUCUCAAGUGCAUUGCAGUUGGAAUUGUGUCUAGAGUGGGCUGCACUUGUCGCAAAAAAGCUGCA ....(.((.....)).).......................((((.((((((.(((((..((((....).)))..))))).)))))).))))(((((....(((((.....)))))..))))).......... (-34.78 = -34.66 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:15 2011