| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,615,198 – 4,615,307 |
| Length | 109 |
| Max. P | 0.500000 |
| Location | 4,615,198 – 4,615,307 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 78.42 |
| Shannon entropy | 0.37358 |
| G+C content | 0.31071 |
| Mean single sequence MFE | -21.44 |
| Consensus MFE | -11.53 |
| Energy contribution | -11.89 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 4615198 109 + 24543557 AGAAAACGAACUAUUUGAGAUAUAAAUGUUUGUUUGUUUGUCUGUCUGGCUGUUCGAAAAAAAAAACUUGCUUGCUGAGCAAACAUGGUAGAUAAAAAGCAAAUUUGAG ...((((((((.(((((.....))))))))))))).(((((((..(((..((((((...................))))))..)).)..)))))))............. ( -20.81, z-score = -0.76, R) >droEre2.scaffold_4784 7325256 92 + 25762168 AUAAAACGAACUAUUUGAGAUAUCAAUGUUUGUUUGUCUAUUUG-----------------AAAUGUUUGCUUGCUUAGCAAACAUGGUAGAUAGAAAGCAAAUUUGAG ...((((((((...((((....)))).)))))))).((((((((-----------------..(((((((((.....)))))))))..))))))))............. ( -29.00, z-score = -5.13, R) >droYak2.chr3L 5190203 85 + 24197627 AUAAAACGAACUAUUUGAGAUAUAAAUAUUUGUUUGUUUGUCUAUUUG-------------AAGUGCUUGCUUGGUAAGCAAACAUGGUAGAUAGAAG----------- ...(((((((.((((((.....))))))))))))).((((((((((..-------------...(((((((...))))))).....))))))))))..----------- ( -21.50, z-score = -3.34, R) >droSec1.super_2 4596889 107 + 7591821 AGAAAACGAACUAUUUGAGAUAUAAAUGUUUGUUUGUCUGUCUGUCUGUCAGUUCGAAAAAAAA--CUUGCUUGCUGAGCAAACUUGGUAGAUAAAAAGCAAAUUUGAG ...((((((((.(((((.....)))))))))))))((((..(.((.(((((((.(((.......--.)))...))))).)).))..)..))))................ ( -19.00, z-score = -0.12, R) >droSim1.chr3L 4146689 107 + 22553184 AGAAAACGAACUAUUUGAGAUAUAAAUGUUUGUUUGUUUGUCUGUCUGUCAGUUCGAAAAAAAA--CUUGCUUGCUGAGCAAACUUCGUAGAUAAAAAGCAAAUUUGAG ...((((((((.(((((.....)))))))))))))((((...((((((.(.(((........))--)((((((...)))))).....)))))))..))))......... ( -16.90, z-score = 0.67, R) >consensus AGAAAACGAACUAUUUGAGAUAUAAAUGUUUGUUUGUUUGUCUGUCUG_C_GUUCGAAAAAAAA__CUUGCUUGCUGAGCAAACAUGGUAGAUAAAAAGCAAAUUUGAG ...((((((((.(((((.....))))))))))))).((((((((((.....................(((((.....)))))....))))))))))............. (-11.53 = -11.89 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:14 2011