| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,590,450 – 4,590,518 |
| Length | 68 |
| Max. P | 0.998894 |
| Location | 4,590,450 – 4,590,518 |
|---|---|
| Length | 68 |
| Sequences | 6 |
| Columns | 68 |
| Reading direction | reverse |
| Mean pairwise identity | 71.29 |
| Shannon entropy | 0.54782 |
| G+C content | 0.28158 |
| Mean single sequence MFE | -13.43 |
| Consensus MFE | -8.84 |
| Energy contribution | -9.90 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.54 |
| SVM RNA-class probability | 0.998894 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4590450 68 - 24543557 GUUACACUUUUUCCUAUCGAUAUUUGGAUAUGCAUUUCUUUAAAGGAAAUGCAUAUAUGAUACAAAUU ..................(.((((...((((((((((((.....))))))))))))..)))))..... ( -15.70, z-score = -3.86, R) >droEre2.scaffold_4784 7300192 67 - 25762168 -AAAACCCUUUUCCUAUCGAUAUUGGUAUAUGCAUUUCUUCGAAGGAAAUGCGUAUAUGAUACAUAUC -.................((((((.((((((((((((((.....)))))))))))))).)...))))) ( -18.20, z-score = -3.87, R) >droYak2.chr3L 5164961 67 - 24197627 -AAAUCCUUUUUUCUAUCGAUAUUGAUAUAUGCAUUUUUUCGAAGGAAAUGCAAGUAUGAUACAUAUU -.................(.((((.((((.(((((((((.....))))))))).)))))))))..... ( -10.70, z-score = -1.12, R) >droSec1.super_2 4572399 68 - 7591821 GUUACAAUUUUUUCUAUCGAUAUUUGGAUGUGCAUUUCUUUAAAGGAAAUGCAUAUAUGAUACAUAUU ..................(.((((...((((((((((((.....))))))))))))..)))))..... ( -15.70, z-score = -3.35, R) >droSim1.chr3L 4122058 67 - 22553184 -GUACACUUUUUCCUAUCGAUAUUUGGAUGUGCAUUUCUUUAAAGGAAAUGCAUAUAUGAUACAUAUU -.................(.((((...((((((((((((.....))))))))))))..)))))..... ( -15.70, z-score = -3.30, R) >triCas2.ChLG1X 7273919 55 + 8109244 UUAACACUUGUUCCUCUCAGUAUUUGGAAGU---UUUUUCGUGUUUAGUUUCAAACUU---------- ..(((((...((((...........))))(.---.....)))))).............---------- ( -4.60, z-score = 0.43, R) >consensus _UAACACUUUUUCCUAUCGAUAUUUGGAUAUGCAUUUCUUUAAAGGAAAUGCAUAUAUGAUACAUAUU ...........................((((((((((((.....))))))))))))............ ( -8.84 = -9.90 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:06 2011