| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,588,052 – 4,588,143 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 4,588,052 – 4,588,143 |
|---|---|
| Length | 91 |
| Sequences | 13 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 89.03 |
| Shannon entropy | 0.25521 |
| G+C content | 0.46092 |
| Mean single sequence MFE | -23.34 |
| Consensus MFE | -19.57 |
| Energy contribution | -19.74 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 4588052 91 + 24543557 GUCCAAUCAUAAACAGGUUCAACUCGACGAAGCCACCGAUGCCUGGGGCAUCAAAGUUGAACGUGUGGAAAUGUAAGUAGCACAGCUUUUU- ......((....(((.((((((((....((.(((.(((.....)))))).))..)))))))).))).)).....((((......))))...- ( -23.10, z-score = -0.84, R) >droGri2.scaffold_15110 23367246 89 - 24565398 --CAAAUCAUAAACAGGUUCAGCUCGACGAAGCCACCGAUGCUUGGGGCAUCAAAGUUGAACGUGUUGAAAUGUAAGUAGUGCAACUUUUC- --.........((((.((((((((....((.(((.((((...))))))).))..)))))))).))))....((((.....)))).......- ( -24.00, z-score = -1.65, R) >droMoj3.scaffold_6680 1315133 89 + 24764193 --CAAAUCAUAAACAGGUUCAGCUCGACGAAGCGACCGAUGCUUGGGGCAUCAAAGUUGAACGUGUUGAAAUGUAAGUAGUGCAACUUUUC- --.........((((.((((((((((......)))..(((((.....)))))...))))))).))))....((((.....)))).......- ( -23.10, z-score = -1.26, R) >droVir3.scaffold_12758 188663 90 + 972128 --CAAAUCAUAAACAGGUUCAGCUCGACGAAGCCACCGAUGCUUGGGGCAUCAAAGUUGAACGUGUUGAAAUGUAAGUAGUGCAACUUUUUC --.........((((.((((((((....((.(((.((((...))))))).))..)))))))).))))....((((.....))))........ ( -24.00, z-score = -1.60, R) >droWil1.scaffold_180698 695687 84 - 11422946 AUAAAUUCAUAAACAGGUUCAACUCGACGAAGCCACCGAUGCCUGGGGCAUCAAAGUUGAACGUGUCGAAAUGUAAGUAGCACA-------- ............(((.((((((((....((.(((.(((.....)))))).))..)))))))).)))..................-------- ( -21.40, z-score = -1.59, R) >droPer1.super_24 1196667 91 - 1556852 GUCCAAUCAUAAACAGGUUCAACUCGACGAAGCCACCGAUGCCUGGGGCAUCAAAGUUGAACGUGUUGAAAUGUAAGUAGCACAGCUCUCU- ...........((((.((((((((....((.(((.(((.....)))))).))..)))))))).))))((..(((.......)))..))...- ( -23.80, z-score = -1.25, R) >dp4.chrXR_group8 2689717 91 + 9212921 GUCCAAUCAUAAACAGGUUCAACUCGACGAAGCCACCGAUGCCUGGGGCAUCAAAGUUGAACGUGUUGAAAUGUAAGUAGCACAGCUCUCU- ...........((((.((((((((....((.(((.(((.....)))))).))..)))))))).))))((..(((.......)))..))...- ( -23.80, z-score = -1.25, R) >droAna3.scaffold_13337 2667009 91 + 23293914 GUCCAAUCAUAAACAGGUUCAACUCGACGAAGCCACCGAUGCCUGGGGCAUCAAAGUUGAACGUGUUGAAAUGUAAGUAGCACAGCUUUUU- ((.....(((.((((.((((((((....((.(((.(((.....)))))).))..)))))))).))))...)))......))..........- ( -23.70, z-score = -1.31, R) >droEre2.scaffold_4784 7297707 91 + 25762168 GUCCAAUCAUAAACAGGUUCAACUCGACGAAGCCACCGAUGCCUGGGGCAUCAAAGUUGAACGUGUGGAAAUGUAAGUAGCACAGCUUGUU- ......((....(((.((((((((....((.(((.(((.....)))))).))..)))))))).))).))....(((((......)))))..- ( -24.60, z-score = -1.04, R) >droYak2.chr3L 5162478 91 + 24197627 GUCCAAUCAUAAACAGGUUCAACUCGACGAAGCCACCGAUGCCUGGGGCAUCAAAGUUGAACGUGUGGAAAUGUAAGUAGCACAGCUUUUU- ......((....(((.((((((((....((.(((.(((.....)))))).))..)))))))).))).)).....((((......))))...- ( -23.10, z-score = -0.84, R) >droSec1.super_2 4569985 91 + 7591821 CUCCAAUCAUAAACAGGUUCAACUCGACGAAGCCACCGAUGCCUGGGGCAUCAAAGUUGAACGUGUGGAAAUGUAAGUAGCACAGCUUUUU- ......((....(((.((((((((....((.(((.(((.....)))))).))..)))))))).))).)).....((((......))))...- ( -23.10, z-score = -0.93, R) >droSim1.chr3L 4119608 91 + 22553184 CUCCAAUCAUAAACAGGUUCAACUCGACGAAGCCACCGAUGCCUGGGGCAUCAAAGUUGAACGUGUGGAAAUGUAAGUAGCACAGCUUUUU- ......((....(((.((((((((....((.(((.(((.....)))))).))..)))))))).))).)).....((((......))))...- ( -23.10, z-score = -0.93, R) >triCas2.ChLG3 28543736 91 + 32080666 CUCCCAGCACAUGAAGGCCCUCCUCGACGAGGCCACCGACUCCUGGGGCAUCAACGUGGAACGAGUUGAAAUGUACAACGUACAAUUUUUU- .((((((....((..((((.((......))))))..))....))))))..(((((.........)))))..(((((...))))).......- ( -22.60, z-score = -0.12, R) >consensus GUCCAAUCAUAAACAGGUUCAACUCGACGAAGCCACCGAUGCCUGGGGCAUCAAAGUUGAACGUGUUGAAAUGUAAGUAGCACAGCUUUUU_ ............(((.((((((((....((.(((.(((.....)))))).))..)))))))).))).......................... (-19.57 = -19.74 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:06 2011