| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,580,405 – 4,580,496 |
| Length | 91 |
| Max. P | 0.880062 |
| Location | 4,580,405 – 4,580,496 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 95.23 |
| Shannon entropy | 0.08531 |
| G+C content | 0.34500 |
| Mean single sequence MFE | -19.64 |
| Consensus MFE | -14.42 |
| Energy contribution | -14.34 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.86 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.880062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4580405 91 + 24543557 CGCCACAAGUUAUUCCAGCCGACACGUUUGUUAACAAGAGAUAUUUAUACAUAUA--CUCUUAUAUGUGUAUUUUUUGG-UUGCAUUUUCUUGU ....(((((......(((((((....((((....)))).......((((((((((--....))))))))))....))))-)))......))))) ( -20.00, z-score = -2.75, R) >droSim1.chr3L 4112055 91 + 22553184 CGCCACAAGUUAUUCCAGCCGACACGUUUGUUAACAAGAGAUGUUUAUACAUAUA--CUCUCAUAUAUGUAUUUUUCGG-UUGCAUUUUCUUGU ....(((((......(((((((.((((((.(.....).))))))..(((((((((--......)))))))))...))))-)))......))))) ( -21.90, z-score = -3.57, R) >droSec1.super_2 4562437 92 + 7591821 CGCCACAAGUUAUUCCAGCCGACACGUUUGUUAACAAGAGAUCUUUAUACAUAUA--CUCUCAUAUAUGUAUUUUUCGGGUUGCAUUUUCUUGU ....(((((......(((((((((....)))).....((((.....(((((((((--......))))))))).)))).)))))......))))) ( -19.80, z-score = -2.80, R) >droYak2.chr3L 5154580 93 + 24197627 CGCCACAAGUUAUUCCAGCCAACACGUUUGUUAACAAGAGAUAUUUAAACAUAUAUACUCUCAUAUAUGUAUUUUUCGG-UUGCAUUUUCUGGU .((((.(((......(((((((((....)))).....((((.((....((((((((......)))))))))).))))))-)))...))).)))) ( -16.10, z-score = -1.58, R) >droEre2.scaffold_4784 7290209 91 + 25762168 CGCCACAAGUUAUUCCAGCCGACACGUUUGUUAACAAGAGAUCUUUAUACAUAUA--CUCUCAUAUAUGUAUUUUUCGG-UUGCAUUUUCUUGU ....(((((......(((((((....((((....))))........(((((((((--......)))))))))...))))-)))......))))) ( -20.40, z-score = -3.60, R) >consensus CGCCACAAGUUAUUCCAGCCGACACGUUUGUUAACAAGAGAUAUUUAUACAUAUA__CUCUCAUAUAUGUAUUUUUCGG_UUGCAUUUUCUUGU ....(((((......(((((((((....)))).....((((.....(((((((((........))))))))).)))))).)))......))))) (-14.42 = -14.34 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:03 2011