| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,580,170 – 4,580,274 |
| Length | 104 |
| Max. P | 0.973134 |
| Location | 4,580,170 – 4,580,274 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 72.62 |
| Shannon entropy | 0.52227 |
| G+C content | 0.43430 |
| Mean single sequence MFE | -26.98 |
| Consensus MFE | -16.96 |
| Energy contribution | -18.12 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.88 |
| SVM RNA-class probability | 0.973134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4580170 104 - 24543557 AUAAAACAACAA--CAACAACAUCGAAGAAGGCAGCAUAUGUUUGUGGCUGCCACUGCAGGUUGCAA-CAGUUUUUUUUUCGGUAUCAACCAGAACCGGAACUGCCA ............--................(((((....((((.(..(((((....))).))..)))-)).......(((((((.((.....)))))))))))))). ( -25.80, z-score = -0.93, R) >droSim1.chr3L 4111822 102 - 22553184 AUAAAACAACAA--CAACAACAUCGAAGAAGGCAGCAUAUGUUUGUGACUGCCACUGCAGGUUGCAA-CAGC--UUUUUUCGGUAUCAACCGGAACCGGAACUGCCA ............--.......((((((((((((((((((....)))).)))))..(((.....))).-....--.))))))))).....(((....)))........ ( -26.90, z-score = -1.60, R) >droSec1.super_2 4562204 102 - 7591821 AUAAAACAACAA--CAACAACAUCGAAGACGGCAGCAUAUGUUUGUGGCUGCCACUGCAGGUUGCAA-CUGC--UUUUUUCGGUAUCAACCGGAACCGGAACUGCCA ............--.......((((((((.(((((((((....))).))))))...((((.......-))))--..)))))))).....(((....)))........ ( -29.00, z-score = -1.65, R) >droYak2.chr3L 5154332 105 - 24197627 AUAAAACAACAA--CAACAACAUCGAAGAAGGCAGCAUAUGUUUGUGGCUGCCACUGCAGGUUGCAACCUGCUAUUUUUUCGGUCCCAACCGGAACCGGAAAUGUUA ............--.((((..((((((((((((((((((....))).))))))...((((((....))))))...))))))))).....(((....)))...)))). ( -34.90, z-score = -3.31, R) >droEre2.scaffold_4784 7289960 102 - 25762168 AUAAAACAACAA--CAACAACAUCGAAGAAGGCAGCAUAUGUCUGUGGCUGCCACUGCAGGUUGCAA-CUGC--UUUUUUCGGUCCCAACCGGAACCGGAACUGUUA ............--.((((..((((((((((((((((((....))))((.(((......))).))..-))))--)))))))))).....(((....)))...)))). ( -30.60, z-score = -2.01, R) >droWil1.scaffold_180698 687174 78 + 11422946 GUUAUAUUAUGAGUUAUUAUUUUUGGAUGUACAAGUAGUCAUUUAUGAAU-UUGUUGCAAGCGGCAAGUAGC--CUUGCUC-------------------------- (((((.((((((((.(((((..(((......)))))))).))))))))..-((((((....)))))))))))--.......-------------------------- ( -14.70, z-score = -0.31, R) >consensus AUAAAACAACAA__CAACAACAUCGAAGAAGGCAGCAUAUGUUUGUGGCUGCCACUGCAGGUUGCAA_CAGC__UUUUUUCGGUAUCAACCGGAACCGGAACUGCCA .....................((((((((((((((((((....)))).)))))..(((.....))).........))))))))).....(((....)))........ (-16.96 = -18.12 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:02 2011