| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,572,310 – 4,572,363 |
| Length | 53 |
| Max. P | 0.945179 |
| Location | 4,572,310 – 4,572,363 |
|---|---|
| Length | 53 |
| Sequences | 8 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 73.38 |
| Shannon entropy | 0.53507 |
| G+C content | 0.58289 |
| Mean single sequence MFE | -18.11 |
| Consensus MFE | -11.02 |
| Energy contribution | -11.46 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.945179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4572310 53 - 24543557 GUAUGAAUUUCGGCCCAGGUCCAGGAC-UUUGAACCGAAAGUCCUACGGCGCUC------ (((.((.((((((..((((((...)))-.)))..)))))).)).))).......------ ( -13.70, z-score = -0.49, R) >droSim1.chr3L 4103567 53 - 22553184 GUAGGAAUUUCGGCCCAGGUCCAGGAC-UUUGAACCGAAAGUCCUGCGGCGCUC------ ((((((.((((((..((((((...)))-.)))..)))))).)))))).......------ ( -20.20, z-score = -1.93, R) >droSec1.super_2 4554366 53 - 7591821 GUAGGAAUUUAGGCCCAGGUCCAGGAC-UUUGAACCGAAAGUCCUGCGGCGCUC------ ...((.........))..(((((((((-(((......))))))))).)))....------ ( -16.80, z-score = -0.95, R) >droYak2.chr3L 5146099 53 - 24197627 GUAGGAAUUUGGGCCCAGGUCCAGGAC-UUUGAACCGAAAGUCCUGCGGCGCUC------ ..........((((....(((((((((-(((......))))))))).)))))))------ ( -18.20, z-score = -0.98, R) >droEre2.scaffold_4784 7282125 53 - 25762168 GUAGGAAUUCGGACCCAGGUCCAGGAC-UUUGAACCAAAAGUCCUGCGGCGCUC------ ((........((((....))))(((((-(((......))))))))...))....------ ( -17.80, z-score = -1.49, R) >droAna3.scaffold_13337 2650859 50 - 23293914 ---UCAUGCACAUCCCUGGCCCAGGAC-UUUGAACCGAAAGUCCUGCGGGCCUG------ ---..............((((((((((-(((......))))))))..)))))..------ ( -20.40, z-score = -3.30, R) >droVir3.scaffold_12758 171300 57 - 972128 GUCCGAAUGCUGCUGCCGGU-CAGGAC-UUUGAACCGCAUGUCCUGUGGCCUGCUGCUC- ........((.((.((((..-((((((-..((.....)).))))))))))..)).))..- ( -19.00, z-score = -1.63, R) >droMoj3.scaffold_6680 1297768 60 - 24764193 GGAUGACGGUUCACAUAGGGCCAGGACAUUCGAACCGCAUGUCCUGCGACGCGCUGUCUC ....((((((((.....)))))(((((((.((...)).)))))))(((...))).))).. ( -18.80, z-score = -0.57, R) >consensus GUAGGAAUUUCGGCCCAGGUCCAGGAC_UUUGAACCGAAAGUCCUGCGGCGCUC______ ..................(((((((((.((((...)))).)))))).))).......... (-11.02 = -11.46 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:02 2011