| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,571,753 – 4,571,807 |
| Length | 54 |
| Max. P | 0.859057 |
| Location | 4,571,753 – 4,571,807 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 94.44 |
| Shannon entropy | 0.09405 |
| G+C content | 0.44815 |
| Mean single sequence MFE | -16.96 |
| Consensus MFE | -14.04 |
| Energy contribution | -15.04 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.859057 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4571753 54 - 24543557 GUACAAGUCGUAGUGCGAUGUAACUACCAUGUAUCUGCGGCUUGUUGCAGAAUU ((((((((((((((((.(((.......)))))).)))))))))).)))...... ( -19.20, z-score = -3.01, R) >droEre2.scaffold_4784 7281550 54 - 25762168 GUACAACUCGUCGUGAGAUGUAACUACCAUGUAUCUGCGGCUUGUUGCAAAAUU ...((((..(((((.(((((((.......))))))))))))..))))....... ( -12.40, z-score = -1.24, R) >droYak2.chr3L 5145516 54 - 24197627 GUACAACUGGUAGUGCGAUGUAACUACCAUGUAUCUGCGGCUUGUUGCGAAAUU (((((..(((((((........)))))))))))).(((((....)))))..... ( -14.80, z-score = -1.45, R) >droSec1.super_2 4553812 54 - 7591821 GUACAAGUCGUAGUGCGAUGUAACUACCAUGUAUCUGCGGCUUGUUGCGGAAUU ((((((((((((((((.(((.......)))))).)))))))))).)))...... ( -19.20, z-score = -2.82, R) >droSim1.chr3L 4103021 54 - 22553184 GUACAAGUCGUAGUGCGAUGUAACUACCAUGUAUCUGCGGCUUGUUGCGGAAUU ((((((((((((((((.(((.......)))))).)))))))))).)))...... ( -19.20, z-score = -2.82, R) >consensus GUACAAGUCGUAGUGCGAUGUAACUACCAUGUAUCUGCGGCUUGUUGCGGAAUU ((((((((((((((((.(((.......)))))).)))))))))).)))...... (-14.04 = -15.04 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:01 2011