Locus 6198

Sequence ID dm3.chr3L
Location 4,567,545 – 4,567,613
Length 68
Max. P 0.946795
window8517

overview

Window 7

Location 4,567,545 – 4,567,613
Length 68
Sequences 5
Columns 68
Reading direction reverse
Mean pairwise identity 95.29
Shannon entropy 0.08164
G+C content 0.52941
Mean single sequence MFE -17.82
Consensus MFE -17.26
Energy contribution -17.46
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.52
SVM RNA-class probability 0.946795
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 4567545 68 - 24543557
AAUCCGCUGGCGUUGUUGAAAAUAACCCCCGCAACCGCCUUCAUUAUGCCAGUGCUCAUUUGACUGCC
....(((((((((...((((...................))))..))))))))).............. ( -14.71, z-score =  -1.61, R)
>droSim1.chr3L 4098782 68 - 22553184
AAUCCGCUGGCGUUGUGGAAAAUAACCCCCGCAACCGCCUUCAUUAUGCCAGUGCUCAUUUGACUGCC
....((((((((((((((..........))))))).(....).....))))))).............. ( -18.00, z-score =  -2.06, R)
>droSec1.super_2 4549638 68 - 7591821
AAUCCGCUGGCGUUGUGGAAAAUAACCCCCGCAACCGUCUUCAUUAUGCCAGUGCUCAUUUGACUGCC
....((((((((((((((..........))))))).(....).....))))))).............. ( -19.00, z-score =  -2.55, R)
>droYak2.chr3L 5140986 68 - 24197627
GAACCGCUGGCGUUGUGGAAAAUAACCCCCGCAACCGUCUUCAUUAUGCCAGUGCUCAUUUGGCUGCC
((..((((((((((((((..........))))))).(....).....))))))).))........... ( -19.40, z-score =  -1.55, R)
>droEre2.scaffold_4784 7275397 68 - 25762168
AAACCGCUGGCGUUGUGGAAAAUACCGCCCGCAACCGCCUUCAUUAUGCCAGUGCUCAUUUGACUGCC
....((((((((((((((..........))))))).(....).....))))))).............. ( -18.00, z-score =  -1.33, R)
>consensus
AAUCCGCUGGCGUUGUGGAAAAUAACCCCCGCAACCGCCUUCAUUAUGCCAGUGCUCAUUUGACUGCC
....((((((((((((((..........))))))).(....).....))))))).............. (-17.26 = -17.46 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:03:00 2011