| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,562,158 – 4,562,213 |
| Length | 55 |
| Max. P | 0.507850 |
| Location | 4,562,158 – 4,562,213 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 95.20 |
| Shannon entropy | 0.07581 |
| G+C content | 0.54318 |
| Mean single sequence MFE | -13.62 |
| Consensus MFE | -12.24 |
| Energy contribution | -12.05 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.507850 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4562158 55 + 24543557 CACCAUGUGCCCUUUGACCC-GCCGAUGGGCUCAGGAUCACAUUUUCACUGCAUUG ..((.((.((((.(((....-..))).)))).)))).................... ( -13.30, z-score = -1.00, R) >droEre2.scaffold_4784 7269985 56 + 25762168 AACCAUGUGCUCUUUGACCCCACCGAUGGGCUCAGGAUCACAUUUUCACUGCAUUG ....(((((.((((.((.((((....)))).)))))).)))))............. ( -14.20, z-score = -1.83, R) >droSec1.super_2 4544434 55 + 7591821 CACCAUGUGCCCUUUGACCC-GCCGACGGGCUCAGGAUCACAUUUUCACUGCAUUG ....(((((.(((..(.(((-(....)))))..)))..)))))............. ( -13.50, z-score = -1.35, R) >droSim1.chr3L 4093480 55 + 22553184 CACCAUGUGCCCUUUGACCC-GCCGACGGGCUCAGGAUCACAUUUUCACUGCAUUG ....(((((.(((..(.(((-(....)))))..)))..)))))............. ( -13.50, z-score = -1.35, R) >consensus CACCAUGUGCCCUUUGACCC_GCCGACGGGCUCAGGAUCACAUUUUCACUGCAUUG ..((.((.((((.(((.......))).)))).)))).................... (-12.24 = -12.05 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:59 2011