| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,548,324 – 4,548,423 |
| Length | 99 |
| Max. P | 0.971349 |
| Location | 4,548,324 – 4,548,423 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 75.39 |
| Shannon entropy | 0.46296 |
| G+C content | 0.41108 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -17.34 |
| Energy contribution | -17.70 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.971349 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4548324 99 + 24543557 --UAGAAAACCACGAGUACAUUUCA-UAGUCUAGGCUUAUUUUCGUAAAGUUCACGAGAGGUGUGAGUACCUCAAUUGAAAAAAAGGUGAGGUAUGUGGAAA --.......((((...((((((((.-.(((....))).....((((.......)))))))))))).((((((((.((......))..))))))))))))... ( -27.00, z-score = -3.01, R) >droSim1.chr3L 4079926 99 + 22553184 UAGAAAAAACCACGACUACAUUUCA-UAGUCUAGGCUUAUUUUCGUAAAGUUCACGAGAGGUGUGAGUGCCUCAAU--GGAAAAAGGUGAGGUAUGUGGAAA .........((((...((((((((.-.(((....))).....((((.......)))))))))))).((((((((.(--......)..))))))))))))... ( -26.00, z-score = -2.14, R) >droSec1.super_2 4531026 100 + 7591821 UAGAAAAAACCACGAGUACAUUUCA-UAGUCUAGGCUUAUUUUCGUAAAGUUCACGAAAGGUGUGAGUACCUCAAU-GGAAAAAAGGUGAGGUAUGUGGAAA .........((((.........(((-((((....))...(((((((.......))))))).)))))((((((((..-..........))))))))))))... ( -22.90, z-score = -1.79, R) >droYak2.chr3L 5121973 97 + 24197627 --CAGAAAACCACGACCACUUUUCG-UAGUCUAGGCUUAUUUUUGUAAAGUUCACGAGGAGUGUGGGUACCUCAAU--GGAAAAAGGCGAGGUAUGUGGAAA --.......((((..((((((((((-(...((..((........))..))...)))))))))).).(((((((...--..........)))))))))))... ( -28.72, z-score = -2.16, R) >droEre2.scaffold_4784 7256902 96 + 25762168 --UAGACAACCACGACCACUUUUCA-UAGUCUAGGCUUAUUUUUGUAAAGUUCACGAGAGGUGUGAGUACCUCAAU--G-AAAAAGGUGAGGUAUGUGGAAA --.......((((..(((((((((.-....((..((........))..)).....)))))))).).((((((((.(--.-...)...))))))))))))... ( -25.80, z-score = -1.74, R) >droAna3.scaffold_13337 2627922 86 + 23293914 ------CAGCGCCAAUAAAGUCUAGGCGGUCUAGGCCUAUUUUUUUGUCGAGUUUCAGGGGCG-AAGUGCUUGUCU---------GGAGAAGUGUCUGGAGA ------...((((...........)))).(((((((...(((((..(.((((((((......)-))..))))).).---------.)))))..))))))).. ( -23.20, z-score = 0.23, R) >consensus __GAGAAAACCACGACUACAUUUCA_UAGUCUAGGCUUAUUUUCGUAAAGUUCACGAGAGGUGUGAGUACCUCAAU__G_AAAAAGGUGAGGUAUGUGGAAA .........((((...((((((((...(((....))).....((((.......)))))))))))).((((((((.............))))))))))))... (-17.34 = -17.70 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:57 2011