| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,546,226 – 4,546,334 |
| Length | 108 |
| Max. P | 0.870183 |
| Location | 4,546,226 – 4,546,334 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 82.60 |
| Shannon entropy | 0.29166 |
| G+C content | 0.50563 |
| Mean single sequence MFE | -32.96 |
| Consensus MFE | -21.46 |
| Energy contribution | -23.02 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870183 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4546226 108 + 24543557 ------GAUUGCAUCCGCAUCCGUUGGCUGCGAUGCCUGACGUUGCGAUUGCGAUUACAAUUGCAAUCCA----AAGUGGCAUCCACACCCGCACUAAGUUGCAUUCGCCUAAAUAUC ------((.((((...(((.((...)).)))((((((..((.(((.(((((((((....)))))))))))----).))))))))................)))).))........... ( -32.30, z-score = -1.84, R) >droEre2.scaffold_4784 7254709 105 + 25762168 ------GAUUGCAUCCGCAUCCGUUGGCUGCGAUGCCCGACG-UGCGAUUGCGAUUGCAAUUGCAUGC------AAGUGGCAUCCACACCCCCACUAAGUUGCAUUCGCCUAAAUAUC ------((.((((...(((.((...)).)))(((((((..((-(((((((((....))))))))))).------..).))))))................)))).))........... ( -35.90, z-score = -2.48, R) >droYak2.chr3L 5119719 118 + 24197627 GAUUGCAUCCGCAUCCGCAUCCGUUGGCUGCGAUGCCCGACUUUGCGAUUGCGAUUGCAAUGGCAAUUGCAUGCAAGUGGCAUCCACACCCCCACUAAGUUGCAUUCGGCUAAAUAUC .((((((..((((..((((...((((((......).)))))..))))..))))..))))))(((...((((....(((((...........)))))....))))....)))....... ( -39.40, z-score = -1.55, R) >droSec1.super_2 4528887 99 + 7591821 ------GAUUGCUUCCGCAUCCGUUGGCUGCGAU---------UGCGAUUGCAAUUGCAAUUGCAAUCCA----AAGUGGCAUCCACACCUCCACUAAGUUGCAUUCGCCUAAAUAUC ------(..(((....)))..)...(((((((((---------(((((((((....))))))))))))..----.(((((...........))))).....)))...)))........ ( -30.60, z-score = -3.04, R) >droSim1.chr3L 4077831 93 + 22553184 ------GAUUGCAUCCGCAUCCGUUGGCUGCGAU---------UGCGAUUGCAAUUGC------AAUCCA----AAGUGGCAUCCACACCCCCACUAAGUUGCAUUCGCCUAAAUAUC ------(((((((..((((..(((.....)))..---------))))..)))))))((------(((...----.(((((...........)))))..)))))............... ( -26.60, z-score = -2.24, R) >consensus ______GAUUGCAUCCGCAUCCGUUGGCUGCGAUGCC_GAC__UGCGAUUGCGAUUGCAAUUGCAAUCCA____AAGUGGCAUCCACACCCCCACUAAGUUGCAUUCGCCUAAAUAUC ..........(((((.(((.((...)).))))))))........((((.(((((((((....))............((((...))))..........))))))).))))......... (-21.46 = -23.02 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:56 2011